KEGG   Oxyura jamaicensis (ruddy duck): 118167340
Entry
118167340         CDS       T11549                                 
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03040  Spliceosome
oja04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118167340 (PRPF19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    118167340 (PRPF19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oja03041]
    118167340 (PRPF19)
   04121 Ubiquitin system [BR:oja04121]
    118167340 (PRPF19)
   03400 DNA repair and recombination proteins [BR:oja03400]
    118167340 (PRPF19)
Enzymes [BR:oja01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     118167340 (PRPF19)
Spliceosome [BR:oja03041]
 Complex B
  Other components
   Prp19 complex
    118167340 (PRPF19)
 Complex C
   Prp19-CDC5 complex
    118167340 (PRPF19)
Ubiquitin system [BR:oja04121]
 Ubiquitin ligases (E3)
  U-box type E3
   118167340 (PRPF19)
DNA repair and recombination proteins [BR:oja03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    118167340 (PRPF19)
SSDB
Other DBs
NCBI-GeneID: 118167340
NCBI-ProteinID: XP_035182535
LinkDB
Position
5:complement(join(28698817..28698914,28698997..28699102,28699295..28699465,28699646..28699731,28699908..28699977,28700058..28700213,28700371..28700480,28700703..28700778,28701039..28701113,28701206..28701247,28701353..28701415,28701492..28701565,28701642..28701783,28701872..28701948,28702119..28702268,28702349..28702367))
AA seq 504 aa
MALICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQTVPSSQPNVAGAGESMDLGELAGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVIVFDKSSEQILATLKGHSKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQ
VVRAHEGSVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDESSGCALTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggccctcatctgctccatctccaacgaggtccccgagcacccgtgcgtctcgcccgtc
tccaaccacgtctacgagcggcggctgatcgagaagtacatcgccgagaacggcaccgac
cccgtcaacaaccagccgctgtccgaggagcagctcatcgacatcaaggtcgcccacccg
atccggcccaagccgccgtctgccacgagcatcccggccatcctgaaggcactgcaggat
gagtgggacgccgtcatgctgcacagcttcaccctgcgccagcagctgcagaccacgcgc
caggagctgtcccacgcgctctaccagcacgacgccgcctgccgcgtcatcgctcggctc
accaaggaggtcactgctgccagagaagctctggcgacgctgaaaccgcaggctggcctc
atcgtgccccagaccgtgccgtcctcccagcccaacgtggcgggagctggggagtccatg
gacctgggagagctcgcaggcatgacccccgagatcatccagaagcttcaagacaaggcc
acggtgctgaccacggagcgtaagaagagaggcaagacggttcccgaggagctggtgaag
ccggaggagctcagcaagtaccggcaggtcgcctcgcatgtggggctgcacagcgccagc
atcccggggatcctggccttggacctctgtccgtccgacaccaacaagatcctcaccggc
ggggctgataaaaacgtcatcgtctttgacaagagctcggagcagatcctggcgacgctc
aagggccactccaagaaggtcaccagcgtcgtgttccacccctcgcaggagctggtgttc
tcggcttctcccgatgccaccatccggatctggtctgtgcccaacgcctcctgcgtgcag
gttgtgcgtgcccacgagggctccgtgaccgggctgagcctgcacgccacgggtgactac
ctgctcagctcttctgatgaccagtactgggctttctcggacatccagaccggccgcgtc
ctcaccaaggtgacagacgagagctctggctgcgctctcacctgcgcccagttccacccg
gacgggctcatttttggaacagggacgatggactctcagatcaagatctgggatctgaag
gaacgcaccaacgtggccaacttcccggggcactcgggccccatcaccagcatcgccttc
tccgagaacggctactacctggccacagctgccgacgactcttcggtcaagctgtgggac
ctgcgtaagctgaagaacttcaagaccctgcagctggacaataacttcgaggtgaagtct
ctcatctttgaccagagcggcacctacctggcgctgggcgggacagacgtccagatctac
atctgcaagcagtggacggaaatcctccacttcaccgagcacagcggcctcaccacggga
gtggcttttggccaccacgccaagttcatcgcctcgacgggcatggaccggagcctcaag
ttctacagcctgtag

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