KEGG T11549: 118168068

Oxyura jamaicensis (ruddy duck): 118168068

Entry

118168068         CDS       T11549

Symbol

PAPOLA

Name

(RefSeq) poly(A) polymerase alpha isoform X1

K14376

poly(A) polymerase [EC:2.7.7.19]

Organism

oja Oxyura jamaicensis (ruddy duck)

Pathway

oja03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:oja00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118168068 (PAPOLA)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oja03019]
    118168068 (PAPOLA)
Enzymes [BR:oja01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     118168068 (PAPOLA)
Messenger RNA biogenesis [BR:oja03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     118168068 (PAPOLA)

SSDB

Motif

Pfam:

PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central RMD6 DUF4269

Other DBs

NCBI-GeneID:

118168068

NCBI-ProteinID:

XP_035184041

LinkDB

Position

5:join(40479008..40479015,40488410..40488580,40489192..40489258,40490418..40490499,40490972..40491081,40492910..40492963,40495024..40495135,40496268..40496357,40496453..40496591,40497772..40497844,40499267..40499387,40500308..40500392,40505047..40505100,40505806..40505925,40507574..40507683,40509092..40509213,40510906..40511048,40512375..40512475,40513842..40514062,40514453..40514518,40517493..40517564,40519681..40519776)

AA seq 738 aa
MPFPVTTQGSQTQQLQKHYGITSPISLAAPKEFDCMLTQKLIETLKPYGVFEEEEELQRR
ILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAP
RHVERSDFFTSFYEKLKQQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPED
LDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNIL
GFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWD
PRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKL
FEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGNLEKNEFITLAHVNPQSF
PAPKENPDKEEYRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEMDM
KIAARHVKRKQLHQLLPNHVLQKKKKHSTEGVRLTALNDSSLDLSMDSDNSTSVPSPTSA
MKTSPLNSSGSSQGRSSPAPAVTAASVTNIQVSEVTVPQTNSSESSGGTSSESIPQTATQ
PAISPPPKPTISRVVSSAHPINPSPRTSGNVSTKTPSPVTAVKRTSSPHKEDSPKKIKIE
EQDEISEDSSCIDMNEHEKMETKEQLETEVNVNSQTETLQTTLQAPQKTPSTDLSDIPAL
PANPIPVIKNSIKLRLNR

NT seq 2217 nt +upstreamnt +downstreamnt
atgccgtttcccgttacaacccagggatcacaaacacagcaactacagaagcattatggc
attacctcacctatcagtttagctgcccccaaggagtttgactgcatgcttacccagaaa
ttaatcgaaaccctaaaaccctatggtgtatttgaagaggaagaagaactgcaacgcagg
attctaattttgggaaaactaaataacctggtaaaggagtggatacgggaaatcagtgaa
agcaagaatcttccacaatcagtaatagaaaatgttggaggaaaaatttttacatttgga
tcctatagactaggggttcatacaaaaggtgctgatattgatgccctatgtgttgcacca
agacatgttgaaagaagtgattttttcacatcattttatgaaaaactgaaacaacaagaa
gaagttaaagatttgagggctgttgaagaagcttttgtcccagttattaaactttgtttt
gatggaatagagattgatattttgttcgcaagattagcgctacaaactattcctgaggac
ttagacctccgagatgatagcctacttaaaaatttagacattagatgcatacgaagtctt
aatggttgccgggtaaccgatgaaattctgcatctagtaccaaacattgacaacttcagg
ttaacactgagagctatcaaactgtgggcaaaacgccacaacatctattccaatatacta
ggtttccttggcggtgtttcctgggctatgctagtagcaagaacttgccagctttatcca
aatgcaatagcatcaactcttgtacataaatttttcttggtattttctaaatgggaatgg
ccaaatccagtgctattgaaacagccagaagaatgcaatcttaatttgcctgtatgggac
ccaagggtaaaccccagtgataggtaccatcttatgcctataattacaccagcataccca
cagcagaactctacctacaatgtgtccgtttccacacggatggtcatggttgaggaattt
aaacaaggtcttgctatcacagatgaaattttgctgagtaaggcagagtggtccaaactt
tttgaagctccaaacttctttcaaaagtacaagcattatattgtacttctagcaagcgca
ccgacagaaaaacagcgactagaatgggtgggattggtggaatcaaaaatccgtattcta
gttggaaacctggagaagaatgaattcattacactggctcatgtgaatccacagtcattc
ccagcacccaaggagaatcctgacaaggaagaataccgtacaatgtgggtgattgggttg
gtgttcaagaaaacggaaaattctgaaaatttaagcgttgatcttacttacgacattcag
tcttttacagacacagtttataggcaagcaataaacagcaagatgtttgagatggatatg
aagattgctgcaaggcatgtgaaacgtaagcaacttcatcaactgctacctaatcacgtg
cttcagaaaaagaaaaagcattcaacggaaggggtcagattgacagctctgaatgacagc
agcctagacttgtctatggatagtgataacagcacgtctgtgccttcacctactagtgct
atgaagacgagtccattgaacagttctggaagttctcagggcagaagcagtcctgcgcca
gctgtaacggcagcatctgtgaccaacatacaggtttctgaagtcactgtgccacaaaca
aattccagtgaaagctcagggggtacttcaagtgaaagcattcctcaaactgccacacaa
ccagccatttctccaccaccaaagcctaccatctctagagttgtttcctcagcacatcca
ataaatccatcacccagaacttcaggaaatgtttcaacaaaaacacctagccctgtcaca
gcagtgaaaaggacatcttctcctcataaagaagattctcccaagaaaataaaaattgaa
gagcaggatgaaataagtgaagattctagctgtatagatatgaatgagcatgaaaaaatg
gaaactaaggagcaactcgagacagaagtgaatgttaattcccaaacagaaactcttcag
acaactttacaagctcctcagaaaacacccagtacagacctttcagatatccctgctctc
cctgcaaatcctattcctgttatcaagaattcaataaaattgagattgaaccggtaa

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