KEGG   Oxyura jamaicensis (ruddy duck): 118168310
Entry
118168310         CDS       T11549                                 
Symbol
TDP1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    118168310 (TDP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oja03400]
    118168310 (TDP1)
DNA repair and recombination proteins [BR:oja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     118168310 (TDP1)
SSDB
Other DBs
NCBI-GeneID: 118168310
NCBI-ProteinID: XP_035184480
LinkDB
Position
5:join(37345314..37345318,37345906..37346456,37347805..37347848,37349388..37349443,37350448..37350544,37352670..37352704,37353751..37353843,37356255..37356425,37358386..37358464,37359847..37360032,37360219..37360267,37362812..37362878,37368498..37368605,37370466..37370568,37381714..37381828,37388312..37388385)
AA seq 610 aa
MRTMLQEGAHGKWTVSSSDESTEENSDNEKPSTSSLLSTAQGKASGPQYPCSEARKAAHK
RKASPVKFSDKSLAPESPPAEKQRASQEGLGWCLSSSDEEPEDREKSAPKERVKEEKRDD
APEEPPQNHSKDERSGNHKAEDCNEAPSEAQDTWDLLNGGNPFRFFLTKVTGIEQSYNSG
ALHIKDILSPLFGTLISSAQFNYCIDVEWLVRQYPQEFRKKPLLIVHGEKRESKAQLLAQ
ARPFENISFCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIADDWHQKTQGIWLSPL
YPRLPQGTAGSAGESETNFKSDLISYLMAYNAPTLKEWVDVIQEHDLSETRVYLLGSTPG
RYQGIDKEKWGHLRLRKLLKEHASSVPAQESWPVVGQFSSIGSMGADESKWLCSEFQESL
VAVGSRATSLLKCDVPVHLVYPTVNNVRQSLEGYPAGGSLPYSIQTAQKQLWLHTYFHKW
SAEVSGRSHAMPHIKTYMRPSPDFKKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELG
VLFLPSAFGLDKGYFRVRGKTLSEGNDSATSFPVPFDLPPERYGSKDQPWIWNIPHTDAP
DTHGNMWVPS
NT seq 1833 nt   +upstreamnt  +downstreamnt
atgaggaccatgcttcaggagggtgcccacgggaaatggacagtttcgagcagcgatgag
agcactgaggagaactcggacaacgagaagccgtccacgtcctcgctgctcagcactgca
cagggcaaagccagcgggccccagtacccctgctccgaagccaggaaggctgctcacaag
agaaaagcttctccggtgaagttcagtgataaaagtcttgctccagaatcacctccagca
gagaagcagagagcgagccaggaaggcttaggctggtgtctttccagtagtgacgaagag
cctgaagaccgagaaaaaagtgcccccaaagaaagggtgaaagaagaaaagcgtgatgat
gctcccgaagagccacctcagaatcatagcaaagatgagcgctcagggaatcataaagca
gaggactgtaacgaagcacctagtgaagcccaggatacctgggatttgctgaatggaggg
aaccctttcaggttttttctcaccaaagtcacaggaattgaacagagctataactctgga
gccctgcacataaaagatattttgtctcctctttttgggactctcatttcttctgctcag
tttaattactgcatagatgtggaatggcttgttagacagtatccacaggaattcaggaag
aagccattgttgatagttcatggtgagaagagggaatccaaagctcaactgcttgcacaa
gcacgcccttttgagaacattagtttctgtcaggctaaactggatattgcatttggaact
caccatacgaaaatgatgctgttgttatatgaagaaggtcttcgagttgtgatacataca
tccaatcttattgctgatgactggcatcagaaaactcagggaatatggctaagcccttta
tacccaaggctacctcagggaacagctggttctgctggtgaatctgaaactaattttaaa
tctgacctgataagttacttgatggcttacaatgctcctacactcaaggaatgggtggat
gtgattcaagaacatgacttatcagagacaagagtatatctgcttggttctacccctgga
cgatatcaaggtatagataaagaaaagtggggtcatcttaggctcagaaagcttttgaaa
gagcatgcttcatcagtaccagcacaggagtcttggcctgttgttggacagttctcaagc
attggttcaatgggagctgatgagtccaaatggctgtgctctgagttccaggagagtctg
gtggctgtaggcagcagagcaacaagtctccttaaatgtgatgttccagtccatttggtt
tatcctactgtgaacaatgtgaggcaaagtctggaaggctatcctgctggtggctccctt
ccatacagtatacagacagcacagaaacagctgtggttgcatacttattttcacaagtgg
tcagcagaagtctcaggtcgaagtcatgctatgcctcacattaagacgtacatgagacca
tctcctgacttcaaaaagattgcgtggtttttagttacaagtgccaatctatctaaagca
gcatggggagctttggagaaaaatggcacgcaactgatgatccgctcatatgaacttgga
gtccttttcttgccttcagcatttggattggacaaaggttacttccgtgtgagagggaaa
acgctttcagaaggtaatgattcagcaacatcttttcctgtaccttttgacctgccacca
gaacggtatggaagcaaagatcaaccatggatttggaatattcctcacactgatgcccct
gatacacatggaaacatgtgggttccatcatga

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