KEGG   Oxyura jamaicensis (ruddy duck): 118168363
Entry
118168363         CDS       T11549                                 
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
  KO
K09269  transcription factor SOX5/6/13 (SOX group D)
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:oja03000]
    118168363 (SOX6)
Transcription factors [BR:oja03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    118168363 (SOX6)
SSDB
Motif
Pfam: HMG_box HMG_WDHD1 HMG_box_2 Phage_holin_7_1
Other DBs
NCBI-GeneID: 118168363
NCBI-ProteinID: XP_035184590
LinkDB
Position
5:join(59655522..59655598,59670200..59670443,59685902..59686112,59728462..59728551,59754998..59755170,59758763..59758831,59803497..59803620,59811927..59812006,59836308..59836457,59840398..59840578,59842965..59843155,59868816..59868924,59885707..59885940,59888621..59888837,59896755..59897058)
AA seq 817 aa
MPSNSEVLAGVVGESRTEEWRNSPCIRMSSKQATSPFACAADGEETMTQDLASRDKEEGN
SDQHATSHLPLHNVMHNKPHSEELPTLVTTIQQDAEWDGVISAQHRMESESNKLCSLYSF
RNTSTSPHKPEEGSRDRSELMTSVNFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSS
CMEKLLSKDWKEKMEKLNTSDLLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDE
QKKLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIP
IFPHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQQLYA
AQLASMQVSPGAKMPSTPQPPNTTGALSPTGMKNEKRGTSPVTQVKDEAAQPLNLSARPK
TAEPVKSPTSPTQNLFPASKSSPVTVTNKSGIPSPLGGSLGRGSSLDILSSLNSPALFGD
QDTVMKAIQEARKMREQIQREQQQQQQPHGVDGKLPSMNNMGLNNCRNEKERTRFENLGP
QLTGKPNEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDS
RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYY
EEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQP
QIPITTGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSIPVIQSTYGMKTDSGSLAG
NEMINGEDEIEMYEDYEDDPKSDYSSENEAHEAVSAN
NT seq 2454 nt   +upstreamnt  +downstreamnt
atgccatcaaactctgaagtgctggctggtgtggtaggagaaagcaggacagaagagtgg
aggaacagcccttgtataagaatgtcttccaagcaggctacctctccatttgcatgtgca
gctgatggagaggaaacaatgacccaggacttagcatcacgagacaaggaagagggcaac
agtgatcagcatgcgacctctcatctgcctctacataatgtaatgcacaacaaacctcac
tctgaggagctaccaactctagtcacaaccatccaacaggatgctgagtgggacggggtc
atctcagcccaacacagaatggaatcagagagtaataagttatgttccctatattccttc
cgaaatacctctacctcaccacacaagcccgaagaaggaagtcgtgaccgcagtgagcta
atgaccagtgttaattttggaacaccagagcgccgcaaaggaagccttgcagatgtggtg
gacacactgaagcagaagaaactagaagaaatgaccaggactgagcaagaggattcatct
tgcatggaaaagctactttctaaagactggaaggagaagatggaaaaattaaacacaagt
gatctccttggagaaattaaaggtacaccagaaagcctggcagaaaaagagcgacagctc
tccaccatgatcacccagctgatcagcttacgagagcagctcctggctgcccacgatgaa
cagaaaaagctggcagcctcacaaattgaaaaacaacggcagcaaatggaccttgctcgc
caacagcaagaacagattgcaagacaacagcagcaacttctgcaacagcagcacaaaatc
aatctactgcagcagcaaattcagcaggttcagggtcacatgcctccgctcatgatccca
atttttccacacgaccagcggacactggcagcggctgctgcagcccaacaaggattcctc
ttcccccctggaataacttacaagccaggtgataactaccctgtgcagttcattccatca
acaatggcagctgctgctgcttctggactcagccctttacagctccagcaactgtatgca
gctcagctggcaagcatgcaagtttctcctggagccaaaatgccatctactccacagcca
ccaaatacaacaggggcactctcacccactgggatgaaaaatgagaagagagggaccagt
ccggtaactcaagttaaggatgaagcagcccagccactgaatctttcagcccgacccaag
acagctgaacctgtcaaatccccgacatctccaacacagaatctcttcccagctagcaaa
agcagtccagtgacagtgacgaacaagagcggcatccccagcccacttggtggatctctg
ggaagaggatcctctttagatatcctttccagtcttaattcacctgccctatttggggac
caggatacagtaatgaaagccattcaggaggctcgaaaaatgcgagagcagatccaaagg
gagcagcagcagcaacagcagccgcatggtgttgatggaaaattgccctccatgaataac
atgggtctaaacaactgcaggaatgaaaaggaaagaacaaggtttgagaatttaggcccc
cagttaacagggaaacccaatgaagatggaaagctgggccctggtgtcattgatcttaca
aggccagaagatgcagaaggaagtaaagcaatgaatggctctgcagctaaactacagcag
tattattgttggccaacaggaggtgccactgtggctgaagctcgagtctaccgggattcg
cggggtcgagccagtagcgaaccgcacatcaaacgaccaatgaatgctttcatggtttgg
gcaaaggatgagcgtcgaaaaatcctccaagctttccctgacatgcacaactccaacatt
agcaaaatcctaggatctcgctggaagtccatgtcaaatcaagagaaacaaccttattat
gaagagcaggcacggctaagtaaaatccacctagaaaagtatcctaattacaaatacaaa
cctcgaccaaaacgtacctgcattgttgatggaaagaaattgcgtattggtgaatacaaa
caactgatgaggtctcgaagacaggagatgaggcagttttttaccgtaggacaacagcct
caaattccaatcaccacgggaacgggggttgtctatcctggtgctattaccatggcaact
accacaccatcgcctcagatgacatcggattgctcgagcacctctgccagccctgagccc
agcatccccgtcattcagagcacttacggtatgaagacggacagcggaagccttgctgga
aatgaaatgataaacggagaggatgaaatagaaatgtacgaggactatgaggatgatccc
aaatcagactatagtagcgaaaatgaagcccatgaggcagtcagtgccaactga

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