KEGG   Oxyura jamaicensis (ruddy duck): 118168825
Entry
118168825         CDS       T11549                                 
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118168825 (PCF11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oja03021]
    118168825 (PCF11)
   03019 Messenger RNA biogenesis [BR:oja03019]
    118168825 (PCF11)
Transcription machinery [BR:oja03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     118168825 (PCF11)
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     118168825 (PCF11)
SSDB
Motif
Pfam: PCF11_RFEG_rpt PCF11_charged Pcf11_helical CID Pfc11_Clp1_ID Pcf11_C zf_PCFS4 SHOCT
Other DBs
NCBI-GeneID: 118168825
NCBI-ProteinID: XP_035185339
LinkDB
Position
1:join(197261907..197262095,197266869..197266994,197269205..197269393,197269795..197269986,197270827..197271935,197272209..197272398,197272490..197273132,197273224..197274665,197275969..197276056,197276742..197276861,197277414..197277519,197278158..197278341,197278793..197278948,197279928..197280020,197280650..197280685,197281266..197281472)
AA seq 1689 aa
MSAPEGSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTSPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTVASVPAPSKPHVSQTPHMTVKPPHQTSVQSEKIKPSPSPPLHDTKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKASKTSQAEKQNSTKQEKLKAGEKIQKKELDQTE
AKSKSPSPLKNKLPNTKDTKNQESESTKVSEMSKRDPRLKRHLQEKPEGKEDEVKDKRRN
VDKKEKEEHKTCEHRPVGSRNKVINGVVQKQDTPTEDTEKQGGKQGRSSNRKRSRSRSPK
SRSPSTHSPKRRERRSPKRRLRSLSPTTSTPKIGKIRQIGPKQSHVEEATQAARDERNSN
KRNVKQEVRDPRRVKKAQEDRPQETASQHSTKATPDPKENAENWQGSKAGKRWKSGWEEN
KNSQQSEEHQALGKSPHQRHRENWTAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLASGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCVLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGTNRPFPDNLSPLESRRRLEEQNAAKGARGSKTFDPYDSWGESE
EFRDALRQQGKGTPEFQKIDGDAVCRFDNREERQLLGQAGVREEPRSPFSERFKRARYED
LEKAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRQPAARVGVDGPGSPFVDSPAAG
SNSRIDGPPGQAALRFEGPLVGAGASPFDGPLAGAGGAGAVRFEGPPGQLAGPLRFEGPP
GQVGGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFDGPRGQPSGGLRFEGPHG
QPLGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGHRFEGPHG
QPMGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGAGGLRFDGHLGRTGPRFDGCHAGF
DGQHGQLSLLQRFDGIHGQPGPRFERAPGQQGQPRFDTAIPQRFDGPHQPASRFDLPLGL
QGARFENVANHPASRLEMSPYGQGGPFVDHPSQGYNGPSHGMQFQRPDIFDGSPGPNFNG
PAGPGAQNFALRASGHYFDEKNLQGPQYGSFNSMAVGSNQVSLMAAQPGPYGQGQQYLPN
PGSFVQNPAGGLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAA
EEEDDDQSDQDVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLD
WHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEA
AKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQ
NTSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDLPKVKEEPDDTPTACAEESTPASTD
IKTEPDDSV
NT seq 5070 nt   +upstreamnt  +downstreamnt
atgtcggccccggagggcagcgctggtagcagcgaggcccgggaggatgcgtgtcgcgat
taccagtcgtcgttggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaatgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcgtcagagaagctccctgttatgtatcttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctacttcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcagaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtttctcttagtgttcagcaa
ggatcatctactgtagcttcagttccagcaccttccaagccacatgtgtctcagacacct
catatgacagttaagccacctcatcagacttctgtgcaatctgaaaaaatcaaaccatcc
ccaagtcctccacttcatgataccaaaatagtaaacagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaacaca
accagtcagtctgataccaaggcaagcaaaacatcacaggctgaaaaacaaaactccaca
aagcaagagaaactgaaagcaggtgaaaaaatacagaagaaagagcttgatcagacagaa
gcaaaatctaaatcgccatctcctttgaaaaacaagttacccaatactaaagatactaaa
aaccaggaaagtgaaagcacaaaagtatctgaaatgagtaaacgggatccaagactgaaa
agacaccttcaagaaaagccagagggcaaggaggatgaggtgaaagacaagaggagaaat
gtagacaaaaaagaaaaagaggaacataagacgtgtgaacatagaccagtaggcagcaga
aataaagtaattaatggtgttgttcagaaacaagacacgcctacagaagacacagaaaaa
cagggtggaaaacaagggagatcaagtaacagaaaacggtcacgatcacgctctcctaag
tcacggtcaccatctacacattctccaaaaagaagagagaggagatctcccaaaagaaga
cttagaagcttatctcccactacatcaactcctaaaattggaaagatacgtcagataggt
cctaaacagtctcatgttgaagaagccacacaggcagcaagagatgaaagaaattctaat
aagcggaatgtgaaacaagaggtgcgagatccacggagagtgaaaaaagcccaagaagac
aggcctcaagaaacagcaagtcagcattctacaaaagctactcctgatccaaaggagaat
gcagaaaactggcagggatccaaagcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcgcagcagagtgaagagcaccaagcacttggtaaatctcctcaccaaagacac
cgggaaaactggactgctgctaaaggaattttatcaccccgagcaccgaagcagcagcac
aggctaagtgtggatgccaacttacaaattcctaaagaattgacatctgcaagcaagaga
gagttacttaaaaaggccaatgatcgcttagcatctggtgaaataactcaagatgaattc
cttatggtagctcatcagattcgacagctgttccagtaccaggaaggaaagcacagatgt
aatgtgtgggatagccctacagaggagaaatgtgttttgaaaaagaaacctcttctgtct
gatgcagaattaacatactacgaacacaaagctaaattaaaaagaacccaagttcagcat
tcattatcaaggcttgatctgttggatcctgatgatattttggattatcatttacccgat
gcgttgctttctggaatagaatgtgagcaagcaaaagcaaaacgtggagtacagtttgac
agaaaagagccatttggagaaagatctaggaggcattctcctgtaagtggcactaacaga
ccttttcctgataacctttcaccgcttgagagtcgacgaagacttgaggaacagaatgct
gccaaaggagcaagaggttctaaaaccttcgatccgtatgacagttggggagaatcagag
gaatttagagatgctctcagacaacaggggaaaggcacaccggagttccagaaaatagat
ggtgatgcagtctgcagatttgataatcgtgaagaaagacagcttctcgggcaagctggt
gttcgagaggaaccaagatcgccattcagtgagcgtttcaaaagagctaggtatgaggac
ctggagaaagcaccatttccagaaagtccaggatcaagatttggaggcattgaagccaag
cagagaataagtgccctaatggaagacagacctctatttgatggctcacctagacaacct
gctgcaagggttggggtagatggaccaggaagtccttttgttgacagtcctgctgctggt
tcaaattctcgaattgatgggcctcctggacaggctgctctgagatttgaggggccattg
gttggagcaggtgcatcaccgtttgatggaccactggcgggggcaggtggagcaggagct
gtaagatttgaggggccaccagggcagctggcagggcctctcagatttgaaggaccccct
ggacaggttggaggaggaggcccactgaggtttgagggacctcttgggccgttgcgcttt
gaggggcctgcaggccagcctgtaggtggtcctagatttgaaggacctggagttggtctc
aggtttgatggacctcgtggtcaaccttcgggtggtctcaggtttgaggggcctcatggt
caacctctggggcctcgaggtcaaccagggggtggtctcaggtttgagggaccccatggt
cagcccttggggcctcatggtcaaccagggggtggtctcaggtttgaggggccacattta
cagccattggggccccatggtcaacctggaggtggccacagatttgaggggccacatggg
caacctatggggccacatggaccatcaggaggtgggctcagatttgaggggccacatgga
ccaccaggtgtaggtcctaggttgattgacggaccagtacaccagggagctggtggactt
agatttgatggtcatctgggacggacgggtccaagattcgatggctgtcatgcaggattt
gatggtcagcatggacagctgtctcttttgcaaagatttgatggaattcacggacagcct
ggcccaagatttgaaagggcacctggccagcagggacagccacgatttgatacagccata
cctcaaagatttgatggtcctcaccagccagcctcaaggtttgacctgccccttggcctt
caaggtgcacggttcgaaaatgtagctaaccatcctgcctcaagattagaaatgtcgcca
tacggacaaggtggtccgttcgttgatcatcccagccagggctacaatggaccatctcat
gggatgcagttccagaggcctgacatatttgatggttcgccaggaccaaatttcaatggg
ccagctggcccaggagcacagaattttgcattgagagcatctggacattattttgatgaa
aaaaatcttcagggtcctcaatatggaagcttcaatagtatggcagtgggaagtaatcag
gtttcgctcatggctgctcagccaggaccttatggccaaggtcaacagtatttaccaaat
cctggaagctttgttcagaaccctgcaggaggccttccacattcatatcctgataaccac
cttggacagcttgatgtcaatgaattgtttgctaaactgttgtcaacaggaattctcaaa
ctgtcaaaaactgattccacttcagcacaagtgaacgaaacatcagcccagccagctgct
gaagaggaggatgatgaccagagtgatcaagatgtcccagacctcacaaactttacagtt
gaagaactcagacagcgttatgatagtgttattaaccgactatacactggaattcagtgt
tactcgtgtggaatgagatttactacttcacagacagatgtttatgccgatcacttagat
tggcattatcgccagaaccgcactgagaaagacgttagcagaaaaattacacacagaagg
tggtactacagtttaactgattggattgagtttgaagaaatagccgatctagaggaacgt
gcaaaaagccaattctttgaaaaagcccatgaagaagttgtgctcaagacacaagaagct
gcaaaagagaaggagtttcagagtgtccctgctggaccagctggagcagttgaaagctgt
gaaatttgccaagagcaatttgaacaatattgggacgaggaagaggaagagtggcatcta
aagaatgctatacgagtagatgaaaagatttaccatccatcttgttatgaagactaccaa
aatacgtcatttgattgcacgccatctcccagcaagactcctgtagaaaatcctctaaat
attatgttgaacattgttaaacaagaaacacaagagtcctgtgacttacctaaagtcaaa
gaagagcccgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagat
attaaaacagaacctgatgactctgtttaa

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