KEGG   Oxyura jamaicensis (ruddy duck): 118168872
Entry
118168872         CDS       T11549                                 
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
  KO
K16617  collagen type XIII alpha
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:oja00536]
    118168872 (COL13A1)
Glycosaminoglycan binding proteins [BR:oja00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118168872 (COL13A1)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 118168872
NCBI-ProteinID: XP_035185450
LinkDB
Position
6:complement(join(3412322..3412489,3417010..3417045,3418788..3418841,3419125..3419178,3421513..3421548,3423732..3423812,3425638..3425664,3426179..3426220,3427023..3427076,3427622..3427720,3428260..3428412,3428744..3428788,3429297..3429350,3430133..3430156,3430668..3430736,3431316..3431360,3432070..3432114,3432673..3432759,3433442..3433495,3435454..3435516,3436112..3436138,3436950..3436982,3438658..3438702,3443364..3443390,3443995..3444057,3445305..3445340,3446082..3446108,3446957..3446998,3447457..3447573,3450549..3450614,3454158..3454184,3454464..3454490,3454599..3454625,3455656..3455682,3456159..3456185,3457598..3457633,3461353..3461403,3464023..3464049,3464595..3464630,3467213..3467239,3469798..3469805,3489657..3489726,3496640..3496942))
AA seq 821 aa
MLEEKSWKGVGEAAFDRGCVAPPRTGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLDEKLKFHLPRHREVRETHQRC
NCPAGPPGPTGRPGLPGDKGAMGIPGRPGLKGQAGEKGAPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVR
LAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPAGPEGTPGQPGPIGPPGRVGEPGK
PGRDGKGLPGPPGPKGDPGVQGYPGRKGEAGMSGLPGAHGLPGASGPKGEKGDAGIKGER
GMPGLPGRHGMKGAAGLATAGMKGEPGTPGEKGQPGVPGRMGPPGLPGKRGQRGEKGRAG
DPGLPGLPGLKGEKGNSENALVGGKGEPGPPGLPGPPGPKGEAGDVGAAGPQGEKGEPGA
PGEQGPMGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGLPGVAGPPGPPGQKG
EIGLPGPPGHDGEKGPRGKPGEMGPPGPHGLPGKDGSPGIKGEPGHAGAPGLKGDKGEPG
QAGSPGLDGPTGEKGERGDQGMPGPSGLPGPIGLPGLTGEKGEPGERGDKGSPGESMSGP
PGPQGPPGPPGVQGLPGPKGEAGIDGMKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGT
PGPMGVSGPAGPKGERGSKGDPGIVGPMGPAGLPGLQGLPGDKGIRGLRGFKGEKGEPGL
PGLDGLDAPCPLVWRTFPFLHDCLLFCLGCSFPIPPSSCMP
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgttggaggagaagagctggaaaggcgtgggcgaagcagcttttgacagggggtgcgtg
gctccccccaggaccggcgacggggagagatgctgccgcctccctctcctgctgggctcg
gggctgcccggtgtctccctgctctctctggtgctgagcctcctgctttactttcggacc
tctgatctgcagtcccgggtgtcccacttggaagcggacagacccacgcagctccctgcc
tggctctcagcagaccaaatggagacagctattttgggaagagttgaccaactgcttgat
gagaaattaaagtttcacttgccaagacatcgagaagttcgagagacacaccagcgatgc
aactgcccggcaggtccacctggtcctacaggaagaccagggcttccgggagacaaaggc
gcgatggggattcctggacggccgggactaaaagggcaagccggagagaagggtgctcca
ggagaagcaggcatgtccatcatcgggccccgcggtccacccggacagcctggaactaga
ggttttcctgggttcccgggccctattggcttggacggcaaaccgggtcatcctggacag
aagggggagatgggtgctgcaggtcccaggggacaaccaggacccccaggacaaaaagga
gaaaagggtcagtgtgcggagtacccccacaggctgttgcctctcctcaattcagtgcgg
ctggctccacctccggtcataaagagacgcactttccagggcgaacaaggacaagcggga
atccaaggtcccccggggccccctggcccaccagggccctctggaccggctggacccgag
ggaaccccaggacagcccgggccaatcgggccacctggccgagtgggagaaccggggaag
cctggcagagatgggaagggcttacctgggcctcctggaccaaagggagacccaggggtt
cagggataccccggcagaaagggggaggcaggcatgtcaggcctgcctggtgcgcacggc
ctccctggagcttcgggccccaagggtgaaaaaggggacgccggcataaagggggagaga
ggcatgccagggctgccgggaagacatggcatgaagggagccgctgggttggccaccgcc
gggatgaagggtgagcctgggactccaggagaaaagggacagcctggagtcccagggagg
atgggccccccaggtttgccagggaaaagggggcagcggggggaaaagggacgagctggt
gaccctgggcttcccggactccctggcctgaagggcgagaagggaaacagtgagaatgcc
ttggtgggaggtaaaggggaacccggccccccaggtctgcctggcccccctggaccaaag
ggagaagctggtgatgttggcgctgcaggaccgcagggggaaaagggggagcctggtgca
ccgggagagcagggacccatgggcccgcggggccccaaaggagagcctgggaaggatgaa
atgatggactacgatggcaacatcagtgaagctctccaggaaatacgaactttggccttg
atgggaccaccgggacttccgggtgtggctggacctccagggccaccagggcagaagggt
gaaattggcttgccgggtcctccaggccacgatggagaaaagggaccacggggcaagcca
ggagaaatgggcccccctggccctcatgggctgccaggaaaggatggatctcctgggata
aagggagagccaggccatgctggggctccaggactaaagggggataaaggagagccagga
caagccggctcaccgggtcttgatggccccactggagagaaaggcgaacgaggtgaccaa
gggatgccaggaccatcaggactgccgggtcccattggacttccaggattgacaggagag
aagggcgagcctggggagcgtggagacaaaggaagccccggagaatcgatgtctggcccc
cctggacctcaaggaccaccaggacctccgggtgttcagggcctcccgggaccgaagggg
gaagcagggattgatggaatgaaaggagagaagggtgtccagggtgaaaaaggagacaga
gggccactgggattacccggtgcttcaggtttagacggcaggcctggaccaccgggtact
ccaggaccaatgggggtttcgggaccagcaggaccaaaaggagaaaggggcagtaaagga
gatcctggcattgtaggaccaatgggaccagcaggacttcctggtttacaaggtctgcct
ggtgacaaaggaatccggggtctccgaggttttaaaggcgagaagggtgagccggggtta
cctgggctggacgggctggatgccccgtgcccattggtatggcgtaccttccctttcctg
catgattgtttgcttttttgccttggttgttcttttccgattcctccaagtagttgcatg
ccctag

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