KEGG   Oxyura jamaicensis (ruddy duck): 118169079
Entry
118169079         CDS       T11549                                 
Symbol
ERCC6
Name
(RefSeq) DNA excision repair protein ERCC-6
  KO
K10841  DNA excision repair protein ERCC-6
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    118169079 (ERCC6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oja03036]
    118169079 (ERCC6)
   03400 DNA repair and recombination proteins [BR:oja03400]
    118169079 (ERCC6)
Chromosome and associated proteins [BR:oja03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    118169079 (ERCC6)
DNA repair and recombination proteins [BR:oja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Other TCR factor
      118169079 (ERCC6)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C WHD_Rad26_CSB Helicase_C_2 TFIIF_beta
Other DBs
NCBI-GeneID: 118169079
NCBI-ProteinID: XP_035185928
LinkDB
Position
6:complement(join(18491876..18492310,18492683..18492761,18493105..18493306,18493907..18494638,18494727..18494872,18496718..18496812,18497872..18497991,18498475..18498585,18499331..18499549,18501322..18501417,18502204..18502320,18503676..18503852,18504312..18504482,18511268..18511403,18515103..18515261,18519667..18519792,18529674..18530400,18532364..18532472,18534683..18534803,18537211..18537641))
AA seq 1502 aa
MPTENNHLADNIQEQDTGTAVSNNHLHNAEESGTKQENGVCNSDLGNSSGIHNSPSQPST
SMAVPLEAPKRGQPLLHINRQQIQSVSYSAQAAELKGLGVDVYDQDVLEQGVLQQVDNAI
NEANKATKIADAEKEYQSVLDDLRSCTSSLKQINKIIEQLSPQAANNKDINRKLDSVKRQ
KYNKEQQLKKINAKQKRLQAIIGGTEILDKISEIEFEDDEEPGPSSLGSMLMPVQETEWE
ELIRTGQMTPFGTKIPQKPERKARRLMLNEASDFEKYLADQAKLSSERKKLSLHKGTKKK
AQAKNVQCIASTSTTKEKKSKSLSKTDKRLKKHLKKLQKHALQIQSKAGIPKEKKYPETK
KPKHEQDDDSGESEYVPDEELFDPEEVEEEEEWVPSHANNDSDYELKNLSRKGKYSVKRD
SKEAEEDADYFPSSEEEEPTVGKRKVKRWRDDGDEDYYKQRLRRWQKERLKDKERQVAEE
VSDDSDTEFEEGFRVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIA
FLAGLSYSKIRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYT
NKKVKLIREIASCHGILITSYSYIRLMQDNIHSYDWHYVILDEGHKIRNPNAAVTLACKQ
FRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQV
KTAYKCACVLRDTINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKE
VYQILNGDMQVFSGLVALRKICNHPDLFSGGPKILKGVPDAEVEEADQFGFWKRSGKMIV
VESLLKIWHKQGHRVLFFTQSRQMLQILEAFVRDRSYSYLRMDGTTTIASRQPLITRYNE
DKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLL
TAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDVSQGTETSAIFA
GTGSDVQVPKHQLKRKHEKPSDGDTLKGGLHLGSSSSPKHSKSSNSYSTSHMTNSSKAIE
TSEETKGNLETFNQNSYAKDNAQAATNINSLNKNEEESLETDDKYMSQSLPGDAGSSENA
NSLNIMVTDEIHGAANVKVEEDPTLTCSAAGSWEKQVAKTEDGQSGNNHYKCTSKTKHRV
DVLSHESSHKDKSKKKHHKDAKFEGERIPHLVKQKRYRKEDSEEKEEDPKKNDDYVLEKL
FKKSGVHSVMKHDAIMEASSADYVLVEAEANRVAQDALRALKVSRQRCLGAASGVPTWTG
TSGLSGAPAGIKSRFGQKRNPMLLSSCSTCVSPGRKIKDVDTIRKENVKSSSSSAHFDGK
SETGESSSSALESSSLLAKMRARNHLILPQRTESEGDENLHQAPAPATVSTEYDELLVDV
RNFIAFQARVDGEASTQEILQEFDSKLPAAQSCVFRELLRNLCTFHRSPNGEGVWRLKPE
FR
NT seq 4509 nt   +upstreamnt  +downstreamnt
atgccaacagaaaacaaccacctagcagacaatattcaagaacaagacactggtactgct
gtaagcaataatcatctccataatgctgaagaatcaggaactaaacaagaaaatggcgtg
tgcaacagtgacctgggtaatagttctggaattcacaactctcccagccagccatccacc
tctatggcagttcctttggaggcgcccaaaagaggacaacccctgttacatatcaacagg
cagcagattcagtctgtttcttatagcgcacaggctgctgaactcaaaggtttaggagtt
gatgtctatgaccaggatgtattggagcaaggagttcttcagcaagtagataatgcaatt
aatgaagctaacaaagcaacaaaaatagctgatgctgagaaggagtatcagtcagtgctg
gatgacttaagatcatgcacatcatctctgaaacaaataaacaaaattattgagcaactt
tcacctcaagctgccaacaacaaagatataaacagaaaactagattctgtgaaacgacaa
aaatataacaaggagcagcagctaaagaagatcaatgcaaaacaaaaacgtctccaagca
attattggtggaacagagattcttgataaaataagtgagattgaatttgaggatgatgaa
gaaccgggtccatcctctcttggcagtatgcttatgcccgttcaggaaacagagtgggag
gaacttattcgtactggccagatgaccccttttggaactaaaatacctcagaagccagag
aggaaggcacgccgattaatgctaaatgaagcatctgatttcgagaagtatttagcagac
caagctaagctgtcatctgagagaaagaagttatcccttcacaaaggaacaaagaagaaa
gctcaagccaaaaatgttcaatgcatagcttccacgtctactacaaaggaaaaaaaaagt
aaatccctgtcaaaaacagataagcggttaaaaaaacacttgaagaaacttcagaagcat
gcccttcagattcagtcaaaagcagggattccaaaagaaaagaaatatcctgagaccaag
aagccgaaacatgaacaggacgatgatagtggagagtctgagtatgtacctgatgaggag
ctctttgatccagaagaagtcgaagaggaggaagaatgggtaccttctcatgctaataat
gattctgattatgaactcaagaatttgtcaagaaagggaaaatactcggtgaagagagat
tctaaagaagctgaagaagatgctgactactttccaagctctgaggaggaagagcctaca
gtagggaagcgcaaagtaaagagatggagagatgatggagatgaagactattataaacag
agactaaggaggtggcaaaaagaacgcctgaaggacaaagaacgtcaggtcgctgaggaa
gtttctgatgacagtgacactgagtttgaagagggtttcagagttccaggatttctcttc
aaaaagctttttaagtaccagcagacaggtgttaggtggctctgggaattgcactgccag
caggcaggaggaattctgggagatgagatgggattgggcaagaccatccagataattgcc
ttcttggcaggtctgagctacagcaagatcaggactcgtggttcaaattacaggtatcag
ggactgggtccaacagtgattgtttgtccagctactgtgatgcatcagtgggtaaaagaa
ttccacacttggtggcctccatttagggtcgccattctccatgaaactggttcttacacc
aacaaaaaggtgaaactaattcgtgaaattgcttcatgccatggaattttaattacctct
tattcatacattcgactgatgcaggataacatccacagctatgactggcattacgtgatt
ttggatgagggtcacaaaatccgaaatccaaatgctgcagtaacacttgcgtgcaagcag
ttccgcacaccccatcgcatcatcttgtctggctctcctatgcaaaataacctaaaggag
ctctggtccctctttgactttgtattcccagggaaactgggaacgctacctgtgttcatg
gagcaattttctgttccaataaccatgggaggatactccaatgcctctcctgtgcaggta
aaaactgcatacaaatgtgcatgtgtgttacgggacaccataaacccctacttgctgaga
agaatgaaggctgatgttaaaatgagcctttcacttccagataaaaatgaacaggtcctt
ttttgtcgtttgacagatgagcagcgtcaagtctatcaaaatttcattgactctaaagaa
gtctaccagattctcaatggagacatgcaggttttctcaggactagtagctttgaggaag
atttgcaaccaccctgatctcttctctggtggccccaagattttgaagggtgtaccagat
gctgaagtggaggaagcagatcagtttggattttggaaacggtctggaaaaatgatcgtg
gtagagtctttgctgaaaatatggcacaagcaaggtcatagagtgttgtttttcactcag
tcaagacaaatgttgcagatccttgaagcctttgtgagagacagaagctattcctacctc
aggatggatggcaccacaacaatagcttccagacagccccttataacaagatataatgag
gacaaatccatatttatttttcttctgacaactcgtgttggtggtattggagttaactta
actggtgctgaccgggttattatctatgatcctgactggaatcccagtacagacacacag
gctcgagaacgtgcttggagaataggccaaaagaaacaagtgaccgtgtacaggcttctc
actgcaggtactattgaagagaagatataccacagacaaatcttcaaacagtttttaaca
aacagagtgctgaaagaccctaagcagaggcgctttttcaaatccaatgatctttatgag
ctttttactctgagcagcccggatgtgtctcaggggacagaaacaagtgcaatttttgca
ggtactggttcagatgttcaagtcccaaaacaccaattgaaacggaaacatgaaaagcca
tctgatggtgacactttgaaaggtggtctccatcttggaagcagcagctcaccaaagcac
agcaagtcatccaattcctactcaaccagccacatgacaaattcttctaaagcaatagaa
acaagtgaggaaaccaaaggaaatttggaaacctttaaccaaaatagctatgcaaaagat
aatgcacaggctgctactaatataaattcattgaataaaaacgaggaggaaagcttggaa
acagatgacaaatatatgtcccagtcattgccaggtgatgcagggtcttcagagaatgcc
aactctctaaacatcatggtgactgatgaaatacatggagcagctaatgtaaaagtcgaa
gaagatcctaccctcacatgtagtgcagctggctcttgggaaaagcaggttgctaaaact
gaagatgggcaatcgggtaataatcattataaatgtacctcaaaaacaaagcatagggtg
gatgtgctgtcacatgagagcagccacaaagataagtctaagaagaaacatcacaaagat
gccaagtttgaaggggaacgtattcctcatctagtgaaacaaaagcgctacagaaaggag
gacagcgaagagaaggaggaagatccgaagaaaaatgatgattatgtcttggagaaactc
ttcaaaaaatcaggagtgcacagtgttatgaagcatgatgccattatggaagcttccagt
gcagattatgtgctggtagaggcagaagcaaacagagtggcccaggatgccctgagagcc
ttaaaagtctctcgacagcgatgtttaggagctgcttctggtgtgccaacctggacaggc
acaagtggtctttcaggtgcaccagcaggaataaagagtcggtttggtcaaaaaagaaac
cctatgctgctttcttcatgttctacgtgtgtgtcacctgggaggaagattaaggatgtg
gatacaataaggaaagaaaatgtaaagagtagtagttccagtgcgcactttgatggaaaa
tcagaaacaggagaatcgtcatccagtgcactagagtcttcatccttattagctaagatg
agggcaagaaaccaccttattttaccacaaaggacagagagtgagggagatgagaatctt
catcaagcacccgctccagccacagtttcaacagaatacgatgaattgctggtggatgtg
cggaacttcatagcattccaggcccgtgtggacggtgaggctagtactcaggaaatactg
caggaatttgactccaaactgcctgcagcacagtcttgcgtctttagagaacttctccgc
aatctctgcaccttccataggagccctaacggtgaaggtgtctggagactgaagccagaa
ttccgctga

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