KEGG   Oxyura jamaicensis (ruddy duck): 118169956
Entry
118169956         CDS       T11549                                 
Symbol
RIF1
Name
(RefSeq) telomere-associated protein RIF1 isoform X1
  KO
K11138  telomere-associated protein RIF1
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oja03032]
    118169956 (RIF1)
DNA replication proteins [BR:oja03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    118169956 (RIF1)
SSDB
Motif
Pfam: Rif1_N PirA-like
Other DBs
NCBI-GeneID: 118169956
NCBI-ProteinID: XP_035187694
LinkDB
Position
7:join(37767404..37767501,37768235..37768313,37768913..37769009,37771217..37771347,37771461..37771555,37771854..37772043,37772939..37773031,37773121..37773259,37774509..37774660,37775366..37775486,37776323..37776496,37776750..37776860,37777106..37777168,37777999..37778099,37778464..37778550,37779767..37779840,37779967..37780147,37780708..37780815,37781051..37781200,37782295..37782394,37783507..37783771,37784597..37784639,37784961..37785163,37785591..37785690,37786074..37786205,37787200..37787342,37788098..37788187,37788275..37788329,37789874..37792621,37793148..37793285,37793558..37793635,37793748..37793863,37794405..37794558,37794821..37794923,37795831..37796051)
AA seq 2310 aa
MSAAAGLQPLLETLEDPAAPPGELTDAHLAIVSRLTGEEGKEFTADVGRHFPQLCKVFKD
HISSANLELSNAALQALGFCVFNSKITSELPATEVHDLLSTVNSIAIKTPDKNTRTRALW
VISKQMFPSEIVKKEVSNIISTLETILTKGEAQSMVVEYEALNVVIRLMEQTPTQMGEEA
VRWAKLIIPLVVHSAHKVQLRGATALEMGMPLLLQKQPEVAAVTEHLMTTKLISELQKLF
STKNETYVLKLWPLFVKLLGKTLHRSGSFINSLLQLEELGFRSGSPVVKKIAFIAWKSLI
DNFALNPDILCSAKRLKLLMQPLSSIHVRTEALALTKLEVWWYLLMRLGPQLPANFEQVC
VPLIQSTLSLDSSAALPGTPLRAPTNQNLGLANPTQKSGSYPFASPATPRMNLNSSTAGV
VVIPSIQLLGIEMLLHFLMGPEVLDFAKQNKLVLSLEPLQHPLISSSSFFCKHAATLINA
VQDGFIAIGKEVPDSMLNIIWKDINGYVKTAIESGNKKEKQGSEVLTMLLQALKNTVRSN
SLPVQKILSLIDITVKELPPKVLGSPAYQVADMDLLNGTPALFLIQLPFHDNLLEWCVTD
ERFFVILETLVGYVLSGPTSPLAFSESVLCIINKNAKLVENKEHIWRMWSIVVNPLTEWI
NRTNEVNQGDALEHNFNAVYSALLLPVALIFPVQEFPQPTMKSLLRTWSDLYRAFARCAA
LVATAEENLCCEELCAKIISGLEGETPVVSSMMDGLIHIISVMVDCINFAPYGIKYQPKN
RSPQTPTDWSKKKREPLGKLSSLFKLLVMLINSFHAFSSNEICAEALVSVGPSIIAILHN
IISHVSLPSVIGTMFAIFSKPLAVFYEKAKLADVPKAYSNLNNKLEKLLAEIILCLQSHC
TGSYDSELLEHLSPLLCIMFQHKSKQIRKQCAQFWNATFAKTASLTYPEELKSVLSQAKQ
KIPLLLPGFESVEIAEEHSAPFSEEMENSQWDAKMSGMEVNLGRKRDSILAQTSELKDKS
SNVQVTPAKLKLEFSSSKAKSEILLEEEKSVDFVFIPPETKPRILTEHQKEVLRSKRVGI
PAMYNNLDTSQDTTLFSQYTQSQEDSLEKPSLIENAKEDNKNNSQEENKSEGCIAKSGEI
TGDCKSENSLEDVRKKSVTHMESDSTVNSEGESKSDTAEPMQEEPAVGEGLEKSATETVS
KESLVVNGDTSNVSSSSTSSDVISGTPQPASRRQSFITLEKFDSSENRPFSVSALNSLSE
MSGSSSVPYKQENTNMCKTGTKLEKSREENKNSSQSEQILTAIRRLTRRQSKMEQLGNKH
SRLNRSEQEKSAQESVSNSMEASPELSPAVEDTECVLTAQSQALSSTEAEIKEVEDTLAE
IERVRALDMDSKENTPPEAAGSSDQVTDDDNHVPHVSPTQKTLRRSSRRRSENGEVSVGS
QDKEDGHQKKDKRKEDEKSLQKKLPQTKDDVSQKQKAASGKPTDTANRRESSLPERTAAE
DSGSVGLEEENKSTRKSEDKLKTDMEGQDCSSGTIGEKKKERPRYHTRRSSQGLLSSIEN
SEADGCETKEESVKKRKPGKVKTRSDSLEGKLKDLQPGSHGQEVSSQENESKNLLEANRS
ELSDEISTDMSSSEPQNLKKDLKNEVILTDAGEAGGSACPETSPDTQSTCGEQTKTGVVT
ESFTEPCVSEVLKAGGENTGVEGQRNAEDRSSVLPEYVQGASASSNGPSSLQVPECQHKR
SKRQRKLRSCDCCYTKAKQPVMSFTELKTEDSPDPREPRTTPVQTAADTAEMSASSSFEE
SLAMAPCAMSTPRLPCKDASVFNLKREGMSEDNLQGNGCSMEEENPALVAGEPDDSIMEI
KVDIDENDGTEQGVSECASDEPADSCLAAGHQSEKPGATVKEEEKENGPMEETPGALSGV
SGPEREQMNELESNQDDKEPAENAVAESCAVLDKEMKEELIEAEITVPENVAVDDKGVAE
NNNVDSPQKPENLDSFVVVNESPNGMQARYMWSPSASPSTSILKRGVKRNQDDDSLSPAN
KIRRVSFANPIYQEGLADDIDRRSPVIRSHSSPSSRSLKILSTIQAKHITTPTKGFLSPG
SRNPKFKSSKKCLITEMAKESLPSPTECVYPALAGCKAPVDVILPQITSNICARGLGQLI
RAKNIKTVGDLSTLTALEIKTLPIRSPKVSNVKKALKGYHEQQVKSRGCEELVVLEDAEK
TVNNAEDKSIDEEKLATDLIEPVVLNANGQPTADLLSQIDALAAQLTSEVLYGYSGSQLF
EMQEKLAGMTNCIMKNLQSRWKSPPHDSSD
NT seq 6933 nt   +upstreamnt  +downstreamnt
atgagcgccgccgccggcctgcagcccctgctggagacgctggaggacccggctgccccg
ccgggggagctgacagacgcgcacctcgccatcgtcagtcgcttgactggtgaggaaggc
aaagaattcacggctgatgtcggaagacacttccctcagctttgcaaagtgttcaaggac
cacatttctagcgcaaatttagagctaagtaacgcagcgttgcaggccttaggattctgc
gtttttaactcaaagatcacatctgagttaccagcaactgaagtacacgacttgctttca
acggtgaacagcattgctataaaaactccagacaaaaacactcgcactcgagcactttgg
gtgatttctaagcagatgtttccttctgaaattgttaaaaaggaggtgtccaatattatt
tctacactggaaacaatacttactaaaggagaagcccagtctatggtcgttgaatatgaa
gcactgaatgttgttatacgcttaatggagcaaaccccaacccagatgggagaagaggct
gtgaggtgggcaaagctgatcattcctctggtcgtccattcggctcataaagtgcagctc
cgaggtgccactgcgctggagatgggcatgcccctgctgctgcagaaacagccggaggtg
gcagctgtcactgaacacctaatgaccacaaaattaatttcagaacttcaaaaactgttt
tctacaaaaaatgagacttacgtcttaaaactatggccactgtttgtcaaattacttgga
aagactctgcatcgtagtggcagtttcatcaattcgttgctgcagctggaggaacttgga
ttccgtagtggctcaccggtagtaaagaaaatagccttcattgcatggaagagtctaata
gataattttgctttaaatccagatatattgtgcagtgctaaaaggctgaaattgttaatg
cagcccctgagctcaatccatgtgagaacagaggctttagcactgacgaaactggaggtc
tggtggtatttgctcatgaggctgggacctcagctgcctgcaaactttgaacaggtttgt
gtaccgctaatccagagtactctcagtctagattcttctgctgcgttgccaggaactccc
ttgcgtgcaccaaccaaccaaaatctgggtttggcaaaccctacacagaaatcaggttct
tatccatttgcaagtccggccacaccaagaatgaacttgaattctagtactgcaggagtg
gtggtgattccttctatccagcttctgggaattgaaatgctgcttcacttcttgatggga
ccagaagttttggattttgcgaagcaaaacaaacttgtacttagtttagagcctctccag
cacccactcatcagcagctcatcttttttttgtaagcatgccgccacacttataaatgca
gttcaggatggatttattgcaattggaaaagaagttccggattctatgctgaatattata
tggaaggatataaatggatatgtaaaaacagctattgaatcaggtaataagaaagaaaag
caggggtcagaagtactgactatgctactccaggccctaaaaaacactgttagatcaaat
tctcttcctgtgcagaaaatactgtctctcattgatattactgttaaggaattacctccc
aaagtattaggatcaccagcttatcaggttgctgatatggatcttttaaatggaacgcca
gctttgttcttaattcagctgcctttccatgataacctcttggagtggtgtgtaacagat
gaaaggttctttgtaatcctagaaactctcgtgggttacgttttatctgggcctacatct
ccactggctttcagtgaatctgtgttatgcattattaacaagaatgcaaagctggtggaa
aacaaggaacatatttggagaatgtggagtattgttgttaaccccctaaccgaatggatt
aatcggactaatgaagtaaatcagggtgatgcactggaacacaatttcaatgctgtttat
agtgcactgttgctaccagtagcccttatcttccctgttcaggaatttccacagccaact
atgaaatccttgctgcgcacttggtctgacctgtatagagcatttgctcgctgtgctgct
ttagttgcaacagcagaagaaaacctatgctgtgaagaactttgtgccaaaataatatct
gggctagaaggtgaaactccagtagtgtcttcaatgatggatggtctcatccatatcata
tccgttatggttgactgcatcaactttgcaccctatggtattaaatatcagccaaaaaat
agatctccacagacacctacagattggtctaagaagaaaagggagccccttggaaagctt
tcgtctctatttaaactcctggtgatgttaataaactctttccatgcgttcagttccaac
gaaatctgtgcagaagcattggtctctgttggtccttcaattattgctattcttcacaac
atcatcagccatgtttcattgccttcggtgattgggacgatgttcgcaattttttcaaag
ccactggcagtgttttatgaaaaagcaaagcttgctgatgtacctaaagcatacagtaat
cttaacaacaagcttgaaaaactcctggctgagataattctgtgtttgcagtctcactgc
actggctcttacgacagcgagctgctagagcacctttctccgttgctctgcataatgttt
cagcataagagcaagcagatccgcaaacagtgtgcccagttctggaacgcaacatttgct
aagactgcatcactgacataccctgaagaattaaaatctgtgttaagccaagccaaacag
aaaattcccctcctgctgcctggctttgaaagcgttgaaatagctgaagaacatagcgcg
ccattctctgaggagatggaaaattcacagtgggatgcaaagatgagtgggatggaagtg
aatctgggtcgaaaacgagactccatattggctcagacaagtgaactaaaagacaagtcc
agtaatgtgcaagtaactcctgcaaagttaaaactagagttttcgtcttcgaaggctaaa
agtgagatccttctggaagaagagaaatctgttgattttgtattcattcctccagaaaca
aaaccaagaatactgacagaacatcaaaaagaagtgctcaggtcaaagagagttggtatt
cctgctatgtacaacaatttagacacttcgcaagatactaccttattttctcagtatact
cagagccaggaagattctctggaaaagccatctttaatagaaaatgcaaaagaagataat
aaaaacaattctcaggaagaaaacaagagtgaaggatgcatcgctaaatcaggtgaaatc
acgggggactgcaaatcagagaactctcttgaggatgtgagaaagaagtctgttactcac
atggagagcgactcaactgtaaatagtgagggggagtcaaaaagtgatacggctgaaccg
atgcaggaggagccagccgttggagaggggttagaaaaaagtgctacagaaacagtttca
aaggagtccttggtggtaaacggcgacacttcaaatgtcagtagcagttcgacttcaagt
gatgtaatttctggaactccccagcctgcaagccgacggcaatcttttattactttggag
aaatttgacagttcagagaacagacccttcagcgtttcggcgttaaacagtctatcagag
atgtccggaagctcttctgtgccatataaacaggaaaatacgaacatgtgcaagactggt
acgaaactagaaaaatctagagaagagaacaaaaattcttcacagtctgaacaaatactt
actgcaatacggaggctaactcgcaggcagagtaaaatggagcagctaggaaataagcat
tccaggttaaataggtcagaacaagagaaaagtgcacaagagtctgtttccaacagtatg
gaagctagtcctgaactgtctcctgccgtggaggacacggaatgtgttctcactgctcag
tcccaagctctcagttctacagaagcagaaattaaagaagttgaagatacactagcagaa
atagaaagggttcgggctttagatatggattcaaaagaaaatacacccccagaggcagct
ggttcgtctgaccaggtaacagatgatgataatcatgtcccacacgtgtcacctactcag
aaaacactaagacgttcttcgaggcggcggtcagaaaacggagaagtgtcagtgggtagt
caagataaggaagatggccaccagaaaaaagacaaacggaaagaagatgaaaaatccctg
caaaagaagttgccacagactaaagacgatgtatcccaaaagcagaaagcagcgtctggg
aaaccaacagacactgcaaatagaagagaaagcagcctgcccgagagaactgctgcagag
gactctggctcagtgggtcttgaggaggagaacaaaagcactaggaagtcagaagataaa
ttgaagacagacatggaaggtcaagactgtagctcaggtacaataggcgagaagaaaaag
gaacgcccacgataccatacaagaagaagctcacaaggattgctttccagcatagaaaat
tcagaggctgatggctgtgagaccaaggaggaaagcgtaaagaagagaaaacctggaaaa
gtgaaaaccagaagtgattctcttgaaggtaaactgaaagacctacagccaggaagccat
ggccaggaggtgtcttcccaagaaaacgaaagtaaaaatctgttggaagcaaatagaagc
gagctaagtgatgaaatcagcacagacatgtcatcgtctgaaccacagaacctgaaaaag
gacctgaaaaatgaagtaattttgacagatgctggtgaagcagggggatctgcctgccca
gagacttcacctgatactcagagcacgtgtggggaacagaccaagaccggggtggtgaca
gaatctttcaccgagccgtgtgtgtctgaagttctgaaagcaggaggggaaaacacaggt
gtggaagggcaaaggaatgcagaagaccgttcaagtgttctgcctgaatatgtacaagga
gcgagtgcttcaagtaacgggccttcctctttgcaagtacctgagtgtcagcacaagaga
agcaaaaggcagagaaaactaaggagctgcgactgctgttacacaaaggcaaagcagcca
gtaatgtcattcacggagctgaaaaccgaggacagccctgacccccgtgagccccgaacc
accccggttcagacagctgcagatacagcagagatgtctgctagctccagttttgaggag
agcttggccatggcgccttgtgcaatgagcacaccgcggcttccttgtaaggacgccagt
gtgttcaacttgaaaagagagggaatgtctgaagataacctgcaagggaatggttgcagt
atggaggaggagaatccagcacttgtagcaggtgaacctgatgattccataatggaaata
aaagtagatattgatgagaatgacggaacagaacagggcgtgtccgagtgtgcttcggat
gagcctgcagacagctgtctggctgcagggcatcaaagtgaaaaaccaggagctacagta
aaggaagaagaaaaggagaatggaccaatggaggagacacctggggcactgagtggtgtt
agtgggcctgagagagaacagatgaatgaactagaaagcaatcaggatgataaagagcca
gctgagaacgctgtagcagagagttgtgctgttctagataaagagatgaaagaggaactg
atagaagctgaaattacagtgcctgaaaatgtggctgtagatgataaaggtgtagcagaa
aataacaacgtggattcacctcagaagccagaaaacctcgattcttttgttgtagtaaac
gaaagccctaacggtatgcaggcacgctacatgtggtctccttcggcttctccatccacc
agtattttaaagagaggtgtgaaaagaaatcaagacgatgattccctgtcacctgctaat
aagatccgtcgtgtctcttttgcaaatcccatttatcaagaaggactggcagatgacata
gacaggaggagccctgtcattagatcccattcttcaccatcttcacgaagtctgaaaatc
ttatctaccattcaggctaagcacattaccactccaaccaaaggatttctgtccccagga
tctcgtaaccctaaatttaagagctcaaagaagtgtttaatcacagaaatggcgaaggaa
tcactgccttctcctacagaatgcgtgtatcctgccttagctggctgtaaggcacccgtt
gatgtaattttacctcagattacctcaaacatctgcgcaagaggcttggggcagctcatt
cgagcaaagaacattaagacagtgggtgatctgagtactctgacggcattagagatcaaa
actcttcccatccgttctcctaaagtgtccaatgttaaaaaagctcttaaaggatatcac
gagcagcaggtaaaatcccgagggtgtgaggagttggtagtgcttgaagatgcggagaag
acagtaaacaacgcagaggataaatctattgatgaggagaaacttgcaacagatttgatt
gaaccggttgtcttgaatgcaaacggccagcccacagcagatcttctgagccagatcgat
gcacttgctgctcagctgacctctgaagttctctatggctattcaggaagccagctcttt
gagatgcaagaaaaacttgcgggcatgacaaactgtatcatgaaaaacctgcagtcccgc
tggaaatcgcccccccacgacagttctgattag

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