Oxyura jamaicensis (ruddy duck): 118170560
Help
Entry
118170560 CDS
T11549
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118170560 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oja03041
]
118170560 (PRPF38B)
Spliceosome [BR:
oja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118170560 (PRPF38B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
118170560
NCBI-ProteinID:
XP_035188781
LinkDB
All DBs
Position
8:join(5625908..5626192,5629344..5629412,5629729..5629880,5629965..5630025,5632408..5632631,5632917..5633775)
Genome browser
AA seq
549 aa
AA seq
DB search
MANNSPAVGAGNCQGQQAAQHQAGAAPPGQQQLQSGAPKPAASGKQGNVLPLWGNEKTMN
LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR
GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW
FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKTIDQQIKSRP
RKIKKDGKEGMEEIDRHVERRRSRSPRRSISPRRSPRRSRSRSHHREPHGSSSFDRELER
ERERQRLEREAKEREKERRRSRSTDRTLERRRSRSRERYRSRSRSRDRKGDRRDRDRERE
KENERSRKKERDYDKERGSEREKDSDRSRERSKERRSKGDTEERRHKDDKDDKKHRDDKR
DSKKERKHSRSRSRERKHRSRSRSKNTGKRSRSRSKEKSSKHKSESKEKSNKRSRSRSRG
RTGSVEKSKKRDHSPSKERSRKRSRSKDRSHKHDPSDSKDHSDKHDRRRSQSTERESQEK
QHKNKDETV
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacagccccgccgtgggcgccggtaactgccaggggcagcaagcggcccag
caccaggccggtgccgcgcccccgggccagcagcagctgcagagcggcgccccgaagccg
gcggcctccggcaagcagggcaacgtgctgccgctgtggggcaacgagaagaccatgaac
ctcaaccccatgatcctcaccaacatcctctcgtcgccctacttcaaggtgcagctctac
gagctgaagacgtaccacgaggtggtggacgagatctacttcaaggttacacatgttgaa
ccatgggaaaaggggagtagaaaaacagcaggccagacaggaatgtgtggaggggtccgt
ggtgttggaactggaggaattgtgtctactgccttttgtctgctctacaaattatttaca
ctgaagctcacccgtaagcaagtgatgggccttataactcatacagactctccatatatt
agggctcttggatttatgtatattaggtacacacaaccacctacagatctatgggactgg
tttgaatcctttcttgatgatgaagaggacttggatgtgaaggcaggtgggggctgtgtt
atgacgatcggggagatgcttcgttccttcctcacgaagctggaatggttttccacatta
tttccaagaattcccgtgccagtccagaagactatcgaccaacaaattaaaagcagaccc
agaaaaatcaagaaagatggcaaggagggaatggaagaaatcgaccggcatgtagaacgt
agacgttcaaggtctccaaggcgatccatcagtcccaggaggtctcccagaagatccaga
agcagaagtcatcatcgggaaccccatggatcatctagctttgacagagaactagaaaga
gaaagagaacggcagagattagaacgtgaagctaaggagagagaaaaagaaaggcggaga
tctcgaagtactgatcgcacgctagaacggagacgaagcagaagcagggaacggtataga
agccgtagtcggagtcgtgacaggaaaggagatagacgagacagggacagggagcgagag
aaagaaaacgaacgcagccgaaaaaaagagagagattatgacaaggagagaggtagcgag
agggaaaaagatagcgatcggtctagagaaagatcaaaagaaaggagaagtaagggtgat
acagaagagagaagacacaaagatgacaaagatgacaagaaacaccgggatgataaaagg
gattccaaaaaagagagaaaacatagtagaagtcgaagccgggaaagaaagcataggagt
agaagtcgaagtaagaatacaggtaagcgcagcagaagcaggagcaaagagaaatcaagt
aaacataaaagcgaaagtaaagagaaatcaaataagcgaagtaggagcagaagcagagga
agaacaggtagtgtcgagaagtccaaaaaacgagaccacagtcccagtaaagaaagatct
aggaagcgtagtagaagcaaagaccggtcccacaaacatgatcccagtgatagcaaggac
cattcagacaaacacgatcgtcgaaggagccaaagtacagagcgagagagccaagaaaag
caacacaaaaacaaagatgagactgtgtga
DBGET
integrated database retrieval system
