KEGG   Oxyura jamaicensis (ruddy duck): 118170650
Entry
118170650         CDS       T11549                                 
Symbol
MSH4
Name
(RefSeq) mutS protein homolog 4
  KO
K08740  DNA mismatch repair protein MSH4
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oja03036]
    118170650 (MSH4)
Chromosome and associated proteins [BR:oja03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    118170650 (MSH4)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_II MutS_IV AAA_14 AAA_22 Aq_aa27 nSTAND3 ATPase_2 AAA_28 nSTAND_NTPase5
Other DBs
NCBI-GeneID: 118170650
NCBI-ProteinID: XP_035188962
LinkDB
Position
8:join(32049062..32049509,32051680..32051841,32054799..32054962,32057746..32057853,32058951..32059066,32059658..32059831,32062158..32062330,32063824..32063891,32068738..32068812,32069125..32069189,32069649..32069818,32071309..32071445,32071871..32071974,32072766..32072890,32074692..32074892,32077166..32077284,32077823..32077951,32079445..32079619,32080704..32080792,32081089..32081274)
AA seq 995 aa
MPRRRPGASGLGGWEMYACAGGPHLSAAFDAILGECGGRGLVFVTEPPPTVPDPGGAAMS
RGGSETNTYGRAVVSAASGSYTGRCSSTSGLGGRVEDPPRYTLGLLQTPCSAADSTGDLS
SGGARPGGSSGAGLAASSSRVKLPVPGRGESYLGDKSSCAENGSMLNFTSSSAQGLNSTY
IGKLPLSTSRSVCRSRTPHMGYSVTSSSAVSAHTAASVIVAVVEGRGLARGEVGMASIDL
KNPEVILSQFADNTTYAKVITKLKILTPLEIIMPNTVCDAGNTKLLGLITEHFKNVTFTT
VQRKYFNETKGLEYIEQLCASEFSTIFMEVQSKYYCLAAAAALLKYVEFIQNSVYAPKSL
KVRFQGSEKTAMIDSSSAQNLELVTNNRDSRNGHTLFGVLNYTKTPGGSRRLRSNILEPL
VDAETINTRLDCVQELLQDEELFFGLQAVISKFLDTEQLLSVLVQIPKQDTVKTAESKIT
NLIYLKHTLELVEPLKAALRSCNTPLLKAYYNSLEDRRFGIILEKITTVINDDTRYTKGC
LSMRTQKCYAVKPNINEFLDIARRTYTEIVDDIAGMITQLAEKYNLPMKTSFSSARGFFI
QMNADCSTLPSGQLPSEFTKITKMKNTYSFTSADLIKMNERCQESLREIYHMTYLIVCKL
LNEIYEHIHCLYKLSDIVSMLDMLLSFAHVCTISDYVRPEFTDTLAIKQGWHPILEKIAM
EKPVSNNTYLTEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYCSFRITEQI
FTRIGMDDDIETNASTFMKEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIGICYAACE
YLLNLKAFTLFATHFLELCHIDALYPNVENYHFEVQHVRSTAIKKEKIAYTYTLSKGYTE
EKNYGLKAAEVSSLPPSIILDAKEITNHIAKQILHQQKSTPEMMKHRAVYHLAMRLVQTA
RNSRLDSDSLRIYLKGLKKKYKASCPASEQNDEQQ
NT seq 2988 nt   +upstreamnt  +downstreamnt
atgccccgccgccgtcctggagcgagcggcctcgggggttgggagatgtacgcatgcgca
ggtgggccgcacctgtcggcagcctttgacgccattttgggagagtgtggtggccgcggg
ttggtctttgtcacggagcctcctcctacggtgcctgatccaggtggcgcggcgatgtca
agaggaggcagtgagacgaatacgtatgggcgggccgtcgtctcggccgcatcggggtcc
tatacgggccgctgctcttccacgtcagggttgggcggacgagtggaagacccgccccgc
tatactctgggcctgttgcagacgccgtgcagcgcggcggacagcactggcgacttgtcc
agcggcggcgcgaggccaggtggctccagtggggcgggccttgctgctagtagtagcagg
gtgaagctgccggttcccgggagaggagaatcttatcttggtgacaaaagttcttgtgca
gaaaatggcagcatgttgaatttcacaagttcttctgcgcaaggcctgaatagcacgtat
ataggaaaattacccctttctactagtagatctgtttgcagaagccgtacccctcatatg
ggatattcagttacatcctcatctgcggtctctgctcataccgctgcatcagttattgta
gctgtagtagaaggaagaggccttgccagaggtgaagtaggaatggccagtattgactta
aaaaatcctgaggtgatattatcacaatttgcagacaatacaacttatgccaaggttatt
actaaactcaagattttaacaccactggaaataataatgccaaacactgtttgtgatgca
gggaacacaaaattgcttggtctgataacagaacatttcaagaatgtgacttttactact
gtccaaagaaaatacttcaatgaaacaaagggtttggaatatatagaacaattgtgtgca
tctgaattcagcaccattttcatggaggttcagtcaaagtactactgtcttgcagctgct
gcagctttgctaaaatatgttgagtttattcaaaattctgtttatgctcctaaatcactc
aaggtgcgtttccaagggagtgagaaaacagctatgatagattcatcatcggctcaaaat
cttgaactagtaactaataatagagattctcggaacggtcacacactttttggtgtccta
aattatactaaaactccaggtggaagtcgaagactcagatccaatatcctggagccacta
gttgatgctgaaacaattaatacaagactggattgtgttcaggaattactccaggatgaa
gagctgttttttggtcttcaagcagttatctcaaagttcctggatacagagcaactgctt
tcagttttggtacaaattccaaagcaggatacagttaaaactgctgaatcaaaaataact
aacttaatttacctgaagcatactctagaacttgtggagcccctaaaagctgctttaaga
agctgtaacacaccattgctaaaggcctattacaattctcttgaagatagaaggtttgga
attatacttgaaaagattacaactgtaattaatgatgatacaaggtacacaaaaggatgt
ctgagtatgaggacacaaaaatgctatgctgttaagccaaacatcaatgaattccttgat
atagctcgtagaacatacacagaaattgttgatgacatagcaggtatgataacacaactt
gcagaaaagtacaacctaccaatgaaaacaagtttcagttctgctcgtggattttttatc
caaatgaatgctgattgttcaacactgcccagtggccaacttccttcagaatttacaaag
atcactaaaatgaaaaacacatatagcttcacttcagcagacttaataaaaatgaatgag
agatgtcaggagtccctgagagaaatatatcacatgacgtacttaatcgtgtgtaaacta
ctgaatgagatctatgaacatattcattgcctgtacaagctgtctgatattgtgtcaatg
ctggacatgctgctttcatttgcccatgtctgcactatttccgactacgttcgtccagaa
tttacggatactttagcgatcaagcagggatggcatcccattcttgaaaagatagctatg
gagaaacctgtatctaacaacacatacctgacagagggtagcaactttctcattattaca
ggtccaaatatgagtggaaaatcaacatatctgaaacagattgcactttgtcaaattatg
gcccagattggttcttacgtcccagcagagtattgttcttttcgaatcacagagcaaatt
tttaccagaataggtatggatgatgatatagaaacaaatgcctcaacattcatgaaggaa
atgaaagagataacatacatcatacaaaacgctaatgacaaatcactcatcataattgat
gaacttggcagaggtaccagtgctgaagaaggtattggcatttgttatgctgcctgtgaa
tatctgttgaatttgaaggcatttacattgtttgctacacatttcctggaactgtgtcat
atagatgctttatatcccaatgtggaaaattaccattttgaagtgcaacatgtgagaagc
actgctataaagaaggaaaaaatcgcgtacacttacacgctctctaaaggatacacagag
gaaaagaactatggattaaaagctgcagaagtttcctcactaccaccatccataattttg
gatgcaaaggaaatcacaaatcatattgcaaaacaaattttgcaccagcagaaaagcact
cctgagatgatgaaacacagagctgtatatcatttagcaatgagattggttcagactgcc
agaaattcacgattagattcagacagtttgcgaatatatttgaaaggtttgaagaaaaag
tataaagccagttgtcctgcatctgaacaaaacgatgaacaacagtaa

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