Oxyura jamaicensis (ruddy duck): 118170907
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Entry
118170907 CDS
T11549
Symbol
USP1
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 1
KO
K11832
ubiquitin carboxyl-terminal hydrolase 1 [EC:
3.4.19.12
]
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
118170907 (USP1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oja01002
]
118170907 (USP1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oja04121
]
118170907 (USP1)
03400 DNA repair and recombination proteins [BR:
oja03400
]
118170907 (USP1)
Enzymes [BR:
oja01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118170907 (USP1)
Peptidases and inhibitors [BR:
oja01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
118170907 (USP1)
Ubiquitin system [BR:
oja04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
118170907 (USP1)
DNA repair and recombination proteins [BR:
oja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
118170907 (USP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
UCH_1
DUF3292
Motif
Other DBs
NCBI-GeneID:
118170907
NCBI-ProteinID:
XP_035189416
LinkDB
All DBs
Position
8:join(29171865..29172034,29172852..29172975,29173326..29173433,29173956..29174116,29174670..29175388,29176467..29176637,29177635..29177836,29182427..29183159)
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AA seq
795 aa
AA seq
DB search
MPGVLPSESGAALRGSPSKRSRLSLKLFQKKEAKRALDFAEPQDGGGSSPEPRGSDIDQV
VPAAQPPSLVSCEKKDNMLPFVGLNNLGNTCYLNSILQVLYFCPGFKTGVKHLYNIISKK
KESLKEEGEQKAEKGNCKEDPLASYELICSLHSLILSIEQLQASFLLNPEKYTDELATQP
RRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEELNKLPLEEPAAKLEEK
PDENIESNGTGNCAEEEDSEPSGPAGEVAEDKVLKGNGKRKSDAEGGNAKKKSKVSKEQI
AAEENQRQTRSKRKATGEKLENQNDAIAKCSAENESAKPTQKKSRLRLNWLKSSCKQPSI
LSKFYSLGKLTTNLGSKDPAKEYDDCELEESSVKCENGSNVKEEGHEPAFPGESHNEKGT
EKEPKKEGTELAVFELVEKLFQGQLVLRTRCLECECFTERREDFQDISVPVQEDELSKTE
ESSEISPEPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVIT
IHLKCFAASGLEFDCYGGLSKINTPLLTPLKLSLEEWSTKPTNDTYGLFAVVMHSGITIS
SGHYTASVKITDLNSLEIDKGNFITDQMYEMIKPEPLNEEEARTVAEDYDDGEVSFRVNG
NAQPGKVLNKKNMEAVGLLGGQKSKSDCDLYNNKPANAEKFLNIVTENRNPESSNTNGSV
ECSTEHGDQNGVAFSGLENKALYVLQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPTSS
STSTPYLLFYKKIVE
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgcccggggtgctccccagcgagagcggagcggcgttgcggggcagcccgtcgaagcgg
agccggctgtcgctgaagctgttccagaagaaggaggccaagcgggcgctggacttcgcc
gagccgcaggacggtggcgggagcagccccgagccgcggggatctgatattgaccaggtt
gttcccgcagcacagcctccgtcgcttgtcagctgcgagaagaaagacaacatgttgcct
tttgtgggcctgaataatctcgggaacacttgttacctgaacagcatccttcaggtgtta
tatttttgtcctggttttaaaactggagtaaagcatttatataacataatttcaaagaag
aaagaatctttgaaagaagaaggagagcaaaaagcggaaaagggaaattgtaaagaagat
cccctggcaagttatgagctgatctgcagtctgcactccctgatcctttccattgagcag
cttcaagccagcttcctcttaaacccggagaaatacaccgatgaacttgctactcagcca
cggaggctactgaatacccttagagagctcaaccctatgtatgaaggctacttgcagcac
gatgcccaggaggttctgcagtgtatcctaggaaacatccaagaaacgtgtcagctgctg
aagaaggaagaattgaacaaactgcctttggaagagcctgcagctaaactggaggaaaaa
cccgatgaaaatattgagagcaatggaactggcaactgtgcggaggaggaggacagtgag
ccaagtggccctgcgggagaggtggccgaagataaggtactcaaaggaaatgggaaaaga
aaaagtgatgccgaaggtggcaatgcaaagaaaaaatccaaagtatcaaaagaacaaatc
gcagcagaagaaaatcaaagacaaaccaggtcgaagaggaaagcaacgggagaaaagctc
gaaaatcaaaacgatgccattgccaagtgctccgctgaaaacgagagtgcgaagccaaca
cagaagaagtcacgacttcgattaaactggttaaaatcttcgtgcaaacaacccagtatt
ctctccaaattttatagtctgggcaagttaacgacaaacttgggatccaaagacccagcg
aaagaatacgatgactgtgagctggaagagtcttctgtcaagtgtgaaaatggtagtaac
gttaaagaagaaggtcacgaaccagcatttcctggggaaagccataatgaaaaaggaact
gaaaaagaaccaaaaaaggaaggtacggagctggctgtttttgaactagtggagaaattg
ttccagggccagttagtactgagaacaagatgcttggagtgcgagtgcttcactgaaaga
agagaagacttccaggacatcagtgttccagtgcaggaagatgaactttctaaaactgaa
gaaagttctgaaatttctccggagccaaaaacagaaatgaagactcttaagtgggcaatt
tcacagtttgcatcggtggaaaggattgtgggagaggataaatatttctgcgagaactgc
catcattacacagaagcagaacgcagtctgttatttgataaaatgcctgaagttataaca
attcatttgaagtgctttgctgctagtggcttagagtttgattgctacggtggactgtcc
aagataaacactcctctgctgacgcctctcaagttgtcgctagaagaatggagcacgaag
ccaactaatgacacctacgggttatttgccgtggtgatgcacagtggcattacaattagc
agtggacactacacagcctctgtcaaaattacagatcttaatagcctagagatcgacaag
ggaaacttcatcactgaccaaatgtacgaaatgattaagccagaaccactgaacgaggag
gaagccagaactgtcgccgaagactacgatgacggtgaagtctctttcagagtcaacggg
aacgcacagccagggaaagttctgaacaaaaagaacatggaagctgttgggcttctgggg
ggacagaagagcaagtctgactgtgacttgtacaataacaaaccagctaacgctgagaag
tttcttaatatagtcactgaaaacagaaaccctgagtctagcaatactaacggaagcgtg
gagtgcagcacggaacacggcgatcagaacggtgttgccttcagcggactagaaaacaaa
gctctgtacgtattgcagagcctgaaagagtatgaaggaaagtggttgctttttgatgac
tctgaagtgaaggtcacagaggaaaaggactttctgaattctctttctccgacatcgtca
tctacatcaactccttacttactgttttataagaaaattgtagagtga
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