KEGG   Oxyura jamaicensis (ruddy duck): 118171515
Entry
118171515         CDS       T11549                                 
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04382  Cornified envelope formation
oja04510  Focal adhesion
oja04512  ECM-receptor interaction
oja04518  Integrin signaling
oja04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oja00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    118171515 (COL4A4)
   04518 Integrin signaling
    118171515 (COL4A4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    118171515 (COL4A4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    118171515 (COL4A4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    118171515 (COL4A4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oja04147]
    118171515 (COL4A4)
   00536 Glycosaminoglycan binding proteins [BR:oja00536]
    118171515 (COL4A4)
Exosome [BR:oja04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   118171515 (COL4A4)
Glycosaminoglycan binding proteins [BR:oja00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   118171515 (COL4A4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 118171515
NCBI-ProteinID: XP_035190578
LinkDB
Position
9:join(3478585..3478640,3481092..3481131,3483046..3483123,3491690..3491824,3492702..3492746,3494374..3494490,3497216..3497284,3497508..3497543,3498329..3498391,3498913..3498948,3499126..3499167,3499879..3499959,3501091..3501144,3502343..3502402,3503040..3503084,3504129..3504182,3506276..3506345,3508599..3508703,3509305..3509469,3510055..3510147,3510489..3510652,3512696..3512768,3514026..3514132,3514566..3514749,3515524..3515592,3516728..3516832,3517326..3517544,3518267..3518428,3519081..3519251,3520198..3520341,3521023..3521130,3521392..3521570,3523905..3523968,3525344..3525418,3525831..3525938,3526267..3526374,3530595..3530666,3531451..3531579,3532997..3533104,3533906..3534061,3534727..3534825,3535134..3535142,3536026..3536157,3537015..3537131,3538054..3538242,3539888..3540174,3540913..3541176)
AA seq 1681 aa
MALTKDSFERIKWLIRAAWWLLIVFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGSTGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKHGVDGCNGSRGDPGFPGENGYIGPRGPYGNPGQKGEKGNSVFVSHFGKGPP
GERGDPGPPGVPGPRGSRGTTGPPGYPGQPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGITGYRGPRGPKGILGRGEKGEKGIAGF
PGLRGSPGSYGPAGFPGIKGETGAAGFPGQPGYPGIKGDPGEKGPPGPPGAVGTPLLPVK
GPQGDPGFPGPAGDVGSVGPSGPAGPLGRPGDDGASLPGLPGLSGAPGPQGFHGDPGLPG
TGEALPGRPGYPGLPGLPGQPGRQGLPGLPSVICTDRGIPGEPGAKGQIGLPGRKGEKGE
KGNQGLCSCSAGPPGPRGIQGPPGTQGKKGQMGYPGRHGEKGDPGLSGAIGSPGLPGAPG
SAGQHGEKGEKGDLGRVRIKGIKGERGPTGAPGFPGQRGNDGRDGDLGLPGEKGAEGDSG
IAVPGDKGLHGVPGLPGVKGPMGLPGLGIPGPPGVRGTPGDFGDTGSIGPPGLKGQKGET
VCIVSPSPGNPGPPGFKGVQGPKGLKGLPGRPGPNGFDGQKGQRGRPGAGIPGPEGFRGK
AGDPGEEGERGSTINGKNGAPGPPGIDGQKGVPGDTTYGPPGIPGNRGLPGPPGAQGPRG
DPGIPGLQGQPGTPGFPGAKGFRGPEGDIGAPGCPGFPGPLCDTGLPGPPGLRGVIGLPG
PQGLPGFKGQKGDRGLAGPPGIKGFKGSPGSRGPPGPPGYRGLPGLPGNNGPPGFPGQTG
SKGIQGPQGFLGLPGTQGPMGISGVKGEEGKMGPPGPSGECGEMGMKGERGPPGDSGSIN
IRLEKGQKGEPGLPGENGFRGERGEKGNIGFRGAPGFPGKNGVPGLPGDHGDTGLMGFPG
SRGFPGPKGFKGITGFQGQPGDQGDAGLPGMPGNPGLTGPKGSKGKRGDPTLLLGIRGQK
GPLGDPGLTGFCGLPGEKGSPGIQGQPGRPGSKGESGYPGIPGFPGAPGPPGLPGEPGEK
GKQGILGPPGLQGLAGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGRPGYSGELG
LKGDRGEPGWPGISIPGAPGERGFPGFPGIRGPVGPAGPMGRSPSSAPPGLPGDQGPPGL
DGIRGQPGNPGPPGETIFVQGDPGDIGIQGAPGISGQRGQQGARGPPGNQGREGPKGPMG
IHGPQGPPGAVGHPGDQGFQGKPGPKGSTGFIGDPGEPGRIDDSCPTIPGPPGEAGQRGD
DGSIGLSGPIGHPGLQGRKGEEGSCGLPGQDGLPGVPGPPGDQGHVGEQGYTGPQGPPGE
TGIPGPPGPHVRSSSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMTPLSEEEIQPYISRCAVC
EAPAQAVAVHSQDQSIPPCPVNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVAPELQFASAPLSGTLKEGQEQRKKISRCQVCLKH
G
NT seq 5046 nt   +upstreamnt  +downstreamnt
atggcattaacaaaggattcgtttgaacggattaagtggcttatcagagctgcctggtgg
ctgctgattgttttttcagcacaagaaattgatgggggaggatacgcatatattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcag
cctggtgagttgggagctcaaggtccaattggatccttaggatctacaggaccagccggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtctagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaaacatggtgtagatggctgcaatggctcaagagga
gatccaggatttccaggcgaaaatggatatattggacctagaggtccttatggaaatcca
gggcaaaaaggagaaaaaggaaattcagtatttgtttcacattttggaaaaggaccccca
ggagagaggggtgatcctggaccccctggcgttcctggtcctagagggtcaagaggtaca
acaggcccacctggatacccaggccagccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggggtagatggacaaaagggggagccgggc
gatgttggactgcctggaccacctgggtcgccactcttagttggacctcctggagctcag
ctgtttaaaggagaaaagggccaaaaaggactacctggaataacaggatacagaggacca
cgtggacccaaaggtatacttgggagaggagaaaagggtgaaaaaggcattgctggattc
cctggattgcggggtagtcctggttcttatggacctgcaggctttcctggaataaaggga
gaaacaggagctgctggtttccctggacaacctggctatccaggcataaagggggatcct
ggagaaaaagggcccccaggtcctcctggagctgttggaactccattgcttcccgtaaaa
ggtccacaaggagatcctggatttccaggtcctgctggcgatgtggggtcagttgggcca
tctggtcctgcgggcccactggggagaccaggagatgatggagcaagtctgcctgggctg
ccaggactaagtggggcaccaggacctcaaggttttcatggtgatcctggtttgccagga
acaggtgaagcacttccaggaagacctggatatcctggactgccaggactaccaggacag
ccaggaaggcaagggttacctggactacctagtgtaatttgtactgacagagggatccct
ggggaaccgggagcaaaaggtcagataggccttccaggaagaaaaggtgaaaaaggagaa
aaaggaaaccaaggcctctgctcatgcagtgctggtcctcctggtccccgtggtatacaa
ggacctccgggtactcaaggaaagaaaggacaaatgggttaccctggaagacacggagaa
aagggtgatccaggcttatctggtgcaataggatcaccagggctccctggggcacctggt
tctgctggacaacatggtgaaaaaggagaaaagggtgacctaggaagagttagaataaaa
ggaataaaaggtgaaagaggtcctactggggctccaggatttccaggccaaagaggtaat
gatggcagagatggggatttaggattgcctggggagaaaggagctgagggtgattctgga
atagcagtgccaggtgataaaggactccatggagtcccaggactccctggagtaaaagga
ccaatgggattgccgggtttggggattcctggccctcctggagtcagaggtacccctgga
gactttggtgatactggtagcattgggccgcctggtctgaagggtcagaaaggtgagact
gtctgtattgtatcaccatcccctggaaacccaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactccctggtcgtccaggaccaaatggctttgatggacaa
aaaggccagcgaggcagaccaggagcaggaatccctgggccagaaggcttccgaggcaaa
gctggtgatcctggtgaggaaggtgaaagaggatctaccattaatggtaaaaatggcgct
ccaggtccacctggcatagatggtcagaaaggtgttccaggtgatactacatatggtcct
ccaggaatcccaggcaataggggactgccaggaccacctggtgcacaaggaccaaggggt
gatccaggcattcctgggcttcaagggcagcctggtaccccaggatttccaggtgctaaa
ggttttagaggcccagaaggtgatataggagcaccaggctgtccaggcttccctggtcca
ctgtgtgacacgggattaccagggccaccaggactcagaggtgtcataggcctgccaggc
cctcaaggcttaccaggctttaaaggtcagaagggagataggggccttgctgggccacct
ggaatcaaaggtttcaaaggctctcctggctcacggggccctccaggtcctccaggctac
cgaggacttccaggacttccaggtaataacggaccacctggcttcccaggacaaacagga
agcaaagggattcaaggaccccagggattcctaggactcccaggaacacaaggcccaatg
ggaatctctggtgttaaaggtgaagaaggaaaaatgggtccacctgggcctagtggagaa
tgtggggagatgggaatgaaaggtgaaagaggacctccaggagacagtggctccattaac
attcggcttgagaaaggacaaaagggagagccaggccttcctggtgagaatggatttaga
ggtgaaagaggtgaaaaaggcaatattggtttcagaggtgccccaggatttccagggaag
aatggtgtcccaggactgccaggtgaccatggtgacactggactgatggggtttccagga
tcacggggtttcccaggaccaaagggctttaaaggaattacagggttccaaggacaacca
ggtgaccagggtgatgctggcttaccaggaatgcctggaaacccaggattgactggccca
aaaggatctaaaggcaagagaggtgacccaactcttctgcttggtatacgtggtcaaaaa
gggcctctcggagacccaggattaacaggattctgtgggttacctggagagaagggttca
ccaggtatccaaggacaacctggaagaccaggatccaagggcgagtctggatacccagga
atacctggatttccaggagctccaggtcctccaggattgccaggagaacctggagaaaaa
gggaaacaaggaattttgggacctccaggattgcaaggattagctggatctcagggcagg
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacttgga
ctgaaaggtgacagaggtgaacctggatggcctggtatttccattccaggtgcccctgga
gaaaggggattcccaggattcccaggtataagagggcctgttggacctgctggacctatg
ggaagatctcccagtagtgcccctcctggtcttccaggtgatcagggaccacctggttta
gatggcatcagaggtcagcctgggaatcctggtcctcctggagagaccatctttgtgcaa
ggagatccaggtgacattggtattcaaggggcaccaggtatttctgggcagcgagggcaa
caaggagccagaggtcctccagggaaccaaggaagagaaggcccaaagggtcccatggga
atccatggcccacagggtccacctggtgctgtaggacacccaggagaccaaggttttcaa
gggaaacctggtcctaaaggttccacaggtttcattggtgaccctggtgaaccaggaaga
atagatgactcatgccctacaattccaggaccacccggggaagcgggacaaagaggagat
gatggctctataggattatcagggccaataggtcaccctggactccaaggaagaaaaggt
gaagaagggtcctgtggcttgccaggtcaagatggtttacctggggtgcctggaccacca
ggtgaccaagggcatgtaggagagcaaggatacactggaccgcaaggtccacctggcgag
accggtatcccaggaccaccaggcccccacgttagatcttcaagtggattcttgcttgtc
cttcacagtcagtcagacagagaaccgctctgtccacagggaatgccaaagttatggacg
ggctatagtctgctgtacctggaaggacaagaaaaagctcacaatcaagatcttggtcta
gcgggatcttgtcttcctgtttttaacactatgcccttcgcttactgtaatatcaaccaa
gtttgttactatgccagccgaaatgataagtcttactggttgtcaagtgctgctcctttg
ccaatgacgcccctctctgaagaggaaatacaaccctacataagcagatgtgctgtatgt
gaggccccagcccaagcagtagcagttcacagccaagatcagtcaattcctccctgcccc
gtgaactggagaagtctttggataggatattcttttttgatgcacactggatctggcgat
cagggtggtggacagtcccttatgtcacctggaagttgcttagaagacttcagatcagca
ccattcattgaatgccagggtcagcggggaacttgtcagttctttgctaatgagtacagt
ttttggctaacaacagtggcgcctgaactgcagtttgcatcagcccccttgtcaggaact
cttaaagagggacaagagcagaggaagaaaatcagtagatgtcaagtatgcctgaagcat
ggttaa

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