KEGG   Oxyura jamaicensis (ruddy duck): 118172702
Entry
118172702         CDS       T11549                                 
Symbol
AMFR
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR
  KO
K10636  E3 ubiquitin-protein ligase AMFR [EC:2.3.2.36]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04137  Mitophagy - animal
oja04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    118172702 (AMFR)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    118172702 (AMFR)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oja04121]
    118172702 (AMFR)
Enzymes [BR:oja01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.36  RING-type E3 ubiquitin transferase (cysteine targeting)
     118172702 (AMFR)
Ubiquitin system [BR:oja04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    118172702 (AMFR)
  Multi subunit type E3
   ERAD complex
    118172702 (AMFR)
   LMBR1L-GP78-UBAC2 complex
    118172702 (AMFR)
SSDB
Motif
Pfam: TPR_SYVN1_N G2BR zf-RING_2 zf-C3HC4_2 CUE zf-C3HC4 zf-C3HC4_3 zf-RING_11 zf-RING_UBOX zf-rbx1 zf-ANAPC11 zf-RING_5 zf-RING_16 Prok-RING_4 zf-C3HC4_4 zf-RING_Vps41 zf_RING_Vps8 Cas_Csy4 RING_Ste5
Other DBs
NCBI-GeneID: 118172702
NCBI-ProteinID: XP_035192687
LinkDB
Position
11:join(1928594..1928803,1930258..1930350,1932125..1932289,1933999..1934151,1938152..1938192,1938713..1938845,1939389..1939522,1941006..1941116,1943623..1943813,1945399..1945502,1947483..1947617,1948671..1948754,1953678..1953862,1955322..1955469)
AA seq 628 aa
MPLLFLERFPWPSLRTYTALSALALLAAALSAYRALGRTPEADGAEPQPRGGPRALDVAS
FLLSDSLCVWVLVNTACCFLMLVAKLIQYVVFGPLRVSERQHLKDKFWNFIFYKFIFIFG
VLNVQTVEEVVMWCLWFSGLVFLHLMVQLCKDRFEYLSFSPTTPMSSHIRVLTLLIAMLL
SCCGLAVVCAVIGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGT
YVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNY
LRVVGNMEARFAVATPEELAVNNDDCAICWDSMQSARKLPCGHLFHNSCLRSWLEQDTSC
PTCRMSLNITDSHHVREDHQRENLDENLGPVAVAEGRPRLNQHNHFFHFDGSRIASWLPS
FSVEVMHTTNILGIAQASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE
GRIQVPFPTQRAENVRPALNNPVERHSTDQEDTETVTQTERVPLELNSRLEEMVEFSEME
AEPSEAEDFEARGSRFSKSADERQRMLVQRKEDLLQQARKRYLNKTSDEELTTEKPSLPE
GASADPVTLRRRTLAAAAERRLQMQQNS
NT seq 1887 nt   +upstreamnt  +downstreamnt
atgccgctgctgttcctggagcgcttcccctggcccagcctccgcacctacaccgcgctc
agcgccctggcgctgctggccgccgccctcagcgcctaccgagccctcggacggaccccc
gaagccgacggcgccgagccccagccgcggggcgggccgcgggccctggacgtcgcctcc
ttcctgctctccgacagcctctgcgtctgggtactggtgaacaccgcttgctgttttctg
atgttggttgctaaactcatccagtatgtggtgtttggtcctcttcgtgtcagcgagagg
cagcatctcaaggataagttctggaatttcatcttctacaagttcatctttatttttggc
gtgctgaatgttcagacagtggaagaagtggtcatgtggtgcctctggttctctgggctc
gtgtttcttcatctcatggttcagctctgcaaggatcgctttgaatatctctccttttct
cctacgacacccatgagcagccacatcagagtgctgaccctgctcatcgccatgctcctg
tcctgctgcggcctggccgtcgtctgtgcggttattggctacacccatggcatgcacacc
ctggctttcatggcagcagagtctctgcttgtgacagtcagaactgctcatgtgatttta
cgatacgtaattcatctctgggatctcaaccatgaaggaacgtgggaaggcaaaggcact
tatgtgtactacacggattttgtcatggagctgaccctgctttcgctggacttgatgcat
cacattcatatgctgctgtttggcaatatctggctgtcgatggcaagcctggtgattttt
atgcagctgcgctacctgtttcacgaggttcaacgaagaattcggcggcacaagaactac
ctgcgcgtggttggaaacatggaggctaggtttgcagttgcgacaccagaggagcttgca
gtcaataatgacgactgtgccatttgctgggactccatgcagtctgcacgtaaactccct
tgcggccatctcttccacaactcgtgcctgcggtcctggctcgaacaagatacatcttgc
ccgacctgcagaatgtctcttaatatcactgacagccatcatgtgagggaagatcaccaa
agggaaaatctggatgagaacctgggccctgtggcagtagcagaaggcagaccacgcttg
aaccagcacaatcacttcttccacttcgatggttctcgaattgccagctggctgcccagt
ttttcagtggaagtgatgcacactacaaacatccttggtattgcacaagccagcaactcc
cagctcaacgctatggctcatcagattcaggagatgttccctcaggttccttatcactta
gttctacaggatctgcagctaacccgctccgtagagataaccaccgacaacatcttagaa
ggacgcatccaggtacctttccccacacagcgtgcagagaacgttagacctgcattaaac
aaccctgtggaacggcacagtacggatcaggaggatactgaaactgtcacccagacggag
agagtaccacttgaactgaactcgagactggaagaaatggtggaattcagcgaaatggaa
gcagaacccagtgaggcagaagattttgaagccaggggcagtcgcttttcaaagtcagct
gatgaaaggcagcgcatgttggttcagcggaaggaggacttgttgcagcaagctcgaaag
cgttatttaaacaaaacctctgacgaggagttgaccacagagaagccctcgctgcccgag
ggagcctccgccgatcccgtcaccctgcgtcgcaggacgctagctgctgccgccgaacgg
agacttcagatgcagcaaaactcttag

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