KEGG   Oxyura jamaicensis (ruddy duck): 118172896
Entry
118172896         CDS       T11549                                 
Symbol
VPS35
Name
(RefSeq) vacuolar protein sorting-associated protein 35 isoform X1
  KO
K18468  vacuolar protein sorting-associated protein 35
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:oja00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    118172896 (VPS35)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oja04131]
    118172896 (VPS35)
Membrane trafficking [BR:oja04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Retromer subcomplex
    118172896 (VPS35)
SSDB
Motif
Pfam: Vps35 FerA
Other DBs
NCBI-GeneID: 118172896
NCBI-ProteinID: XP_035192983
LinkDB
Position
11:join(7711771..7711776,7716286..7716384,7717776..7717872,7718692..7718815,7720164..7720346,7720661..7720874,7721615..7721698,7722175..7722284,7724127..7724223,7724307..7724455,7724984..7725191,7725707..7725862,7726618..7726740,7727608..7727787,7728940..7729179,7729881..7730024,7731336..7731515)
AA seq 797 aa
MSPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNKLGELRTSMLS
PKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYV
KSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEQTDEETTGDISDS
MDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYK
QIVLPGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNII
IALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAM
KCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLK
HFHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQEQVDAIMNLVSTLIQDQPDQPAEDP
DPEDFADEQSLVGRFIHLLRSDDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQL
AFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENH
ETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASK
LLKKPDQCRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQL
FIEILNRYIYFYEKENEAVTIQVLNQLIQKIREDLPNLESTEETEQINKHFHNTLEHLRL
RRESPESEGPIYEGLVL
NT seq 2394 nt   +upstreamnt  +downstreamnt
atgtcgccaacaacacagcagtctcctcaggatgaacaggaaaaactcctggatgaagca
attcaggctgttaaggtgcagtctttccaaatgaagagatgcttggacaaaaacaagctc
atggatgctttgaaacatgcttccaacaagcttggtgagctgcggacttctatgctatct
ccaaagagctattatgagctctacatggcaatttctgatgagctacactacttggaagtc
tacctgacggatgaatttgccaaaggaagaaaagtggcagacctttatgagttagtacag
tatgctggaaatattattccaagactgtatctcctgataacagtaggtgttgtctatgtc
aagtcgtttccacagtccaggaaagatattttgaaagacctggtggagatgtgccgtgga
gtacagcatcctcttagaggcctctttcttcggaactatcttctgcagtgtaccaggaat
attttaccagatgaaggcgagcaaacagatgaagaaaccactggagacatcagtgattcc
atggactttgtgctcctgaattttgctgagatgaacaaactttgggtgcgaatgcaacac
cagggccatagtcgtgatagagagaagagggagcgggaaaggcaggaactgcgaatcctg
gtaggaacaaaccttgttcgcctcagtcagctggaaggtgttaatgtggagcgatacaag
cagattgttctacctggaatattggagcaggttgtaaattgtagagatgctttagctcag
gagtacctcatggagtgtataatacaggttttcccagatgaatttcatctccaaaccctg
aatccatttctcagagcctgtgctgagctgcaccaaaatgtgaatgtgaaaaatataata
attgctttaatcgacaggttagctttatttgcacatcgtgaagatggccctggtatccca
gcagatatcaaactgtttgacatcttttcacagcaggttgctactgtgatacagtctcgc
caagatatgccctcagaggatgtggtatccttgcaagtttctctcattaacctggctatg
aaatgctacccagaccgtgttgactatgttgacaaggtgttggagacaactgtggaaata
ttcaataaacttaatctggaacatattgcaacaagtagtgctgtttcaaaggagctgact
agacttctgaaaatccctgttgatacttacaacaatatcctgacagttctgaaactgaaa
catttccacccactctttgaatactttgattacgagtccaggaagagcatgagttgctac
gtgcttagcaatgtattggattataacacagaaattgtatcccaagaacaggttgatgct
atcatgaatttggtatccacgctgatccaggatcaaccagatcagcctgctgaagaccct
gaccctgaggactttgctgatgagcagagtcttgtgggaagatttattcatcttttacga
tcagatgaccctgaccaacagtatctgatcttaaacactgctcggaaacactttggtgca
ggtgggaatcaacgtattcgttttacactgccaccattggtttttgcagcataccagctt
gcttttcgctacaaggagaattccaaagtggatgacaaatgggaaaagaagtgccagaag
atcttctcatttgctcatcagaccatcagtgctttgatcaaagcagagctggcagagctg
cctctccgtctcttcctacaaggagcgctagctgcaggagagattggctttgagaatcat
gaaactgtggcctatgaattcatgtcccaggccttctctctatatgaagatgaaattagt
gattcaaaagcacagctggctgcaatcaccttgataattgggacatttgagaggatgaag
tgcttcagtgaggagaaccatgagcctttgaggactcagtgtgcattggcagcctctaag
ctccttaagaaaccagaccagtgccgggctgtgagcacttgtgcccatctgttctggtct
ggccgaaacactgacaagaatggagaggagctgcatggaggaaagagagtgatggaatgt
ctgaagaaggctttaaagatagcaaaccagtgcatggacccttctctgcaagttcaactg
ttcatagaaattctgaatagatacatctacttttacgaaaaggaaaatgaggcagtgaca
attcaggttttgaatcagctcatacagaagataagagaagatctcccaaatcttgaatct
actgaagaaacagaacaaatcaacaaacactttcacaacacactggagcacttgcgtctg
aggagggaatcgccagaatctgaggggccaatttatgaaggtcttgttctttaa

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