KEGG   Oxyura jamaicensis (ruddy duck): 118172907
Entry
118172907         CDS       T11549                                 
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118172907 (SF3B3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oja03021]
    118172907 (SF3B3)
   03041 Spliceosome [BR:oja03041]
    118172907 (SF3B3)
   03036 Chromosome and associated proteins [BR:oja03036]
    118172907 (SF3B3)
Transcription machinery [BR:oja03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     118172907 (SF3B3)
Spliceosome [BR:oja03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    118172907 (SF3B3)
 Complex B
    118172907 (SF3B3)
 Complex C
   U2 SnRNP specific factors
    118172907 (SF3B3)
Chromosome and associated proteins [BR:oja03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     118172907 (SF3B3)
    TFTC complex
     118172907 (SF3B3)
SSDB
Motif
Pfam: Beta-prop_RSE1_1st CPSF_A Beta-prop_RSE1_2nd Beta-prop_BBS7 WDR55
Other DBs
NCBI-GeneID: 118172907
NCBI-ProteinID: XP_035193003
LinkDB
Position
11:complement(join(1443641..1443781,1444035..1444139,1444431..1444574,1444939..1445037,1445930..1446142,1447110..1447235,1448312..1448468,1449294..1449499,1450025..1450199,1450954..1451108,1452529..1452651,1453375..1453518,1453978..1454133,1454411..1454566,1454838..1454989,1460067..1460139,1460654..1460749,1461237..1461402,1462584..1462687,1463429..1463566,1464249..1464361,1465189..1465330,1465681..1465853,1466531..1466857,1467549..1467618))
AA seq 1217 aa
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgttcctgtacaacttgacgctgcagcgcgccacgggcatcagctatgccatccacggc
aacttctcaggaaccaagcagcaagaaatcgtcgtgtcccggggcaagatcctggagctg
ctgcgcccggaccccaacacggggaaggtgcacacgctgctgacggtggaggtgttcggg
gtcatccgctcgctcatggccttccgcctgacgggcggcaccaaggactacatcgtggtg
ggcagtgactcggggcgcatcgtcatcctggagtaccagccctccaagaacgtctttgag
aagatccaccaggagaccttcggcaagagcggctgccgcaggatcgtgcccgggcagtac
ctggccgtggacccaaagggccgcgcggtcatgatcagcgctatcgagaagcagaagctg
gtgtacatcctgaacagggatgctgccgcccgcctcaccatctcctccccgctggaggcg
cacaaggccaataccttggtctaccacgtggtgggagtcgacgtggggtttgagaacccg
atgtttgcctgcctggagatggattacgaggaagcagacaacgatcccacgggagaggca
gcagccaacacgcagcagacgttgacgttctatgagctggacctgggtttgaaccacgtt
gttaggaagtacagcgagcccctggaagagcacggcaacttcctaataacagttcctggt
ggttctgacggccccagcggggtgctgatctgttcagagaactacatcacgtacaaaaac
ttcggtgaccagcctgacatcagatgcccgattcccaggagacggaacgacttggatgac
ccggagaggggtatgatttttgtctgctccgccacgcacaagaccaagtccatgttcttc
ttcctggcccagacagagcagggagacatcttcaaaatcactctggagaccgatgaagac
atggtgacagagattcgactgaagtacttcgacaccgttcctgtagctgctgccatgtgc
gtgctgaagacaggctttctcttcgtggcttctgaatttggaaaccactacctgtaccag
atagctcacctgggtgacgacgacgaggagcccgagttctcttctgccatgccccttgag
gaaggagatacgttcttcttccagccacgacccctcaagaacctggtgctggtggatgag
ttggacagtttgtcgcctattctgtgttgtcagatcgccgatctggccaacgaggacacc
ccccagctgtacgtggcctgtggccgggggccccgctcgtctctgagggttctgaggcat
gggcttgaggtgtccgaaatggccgtctcggagctgcccggtaaccccaacgctgtgtgg
accgtgaggaggcacgttgaagatgaatttgacgcctatatcatcgtgtccttcgtaaat
gccacgctggtgctgtccatcggagagaccgtagaagaagtgactgactcgggcttcctg
ggtacaacgcccaccttgtcctgctccctgctgggggacgatgctttggtgcaggtgtac
ccggatggcatccggcacatccgagcagataaaagggtgaacgaatggaagacgcccggg
aagaaaaccatcgtcaagtgcgctgtgaaccagagacaggtggtgatagcgctgaccgga
ggagagctggtgtacttcgagatggacccgtcaggacagctgaacgagtacacagagcgg
aaggagatgtcggccgatgtggtgtgcatgagcttggccaacgttccgcccggcgagcag
cgctcccgcttcctcgccgtcgggctggtggacaacaccgtcaggatcatttccctcgac
ccttcggactgcttgcagccgctgagcatgcaggccctccctgcgcagcccgagtcgctg
tgcatcgtggagatgggcggcacggagaagcaggacgagctgggcgagcggggctccatc
ggcttcctgtacctcaacatcggcctgcagaacggtgtgctgctgcggactgtgctggac
cccgtgacgggtgatctctccgataccaggaccaggtacctgggctcacggcctgtgaag
ctcttccgggtgcggatgcagggccaggaggcggtgctggccatgtcgagccgctcctgg
ctcagctactcctatcagtcccgtttccacctgactcccctgtcctacgagaccctggag
ttcgcctccggttttgcctctgagcagtgccccgagggcattgtggccatctccacaaac
acgctgaggattttggcgctggagaagctgggggcagtcttcaaccaggtcgccttcccc
ttgcagtacacaccccgcaaattcgtcattcaccccgagagcaacaacctgatcatcatc
gagacggaccacaacgcgtacaccgaggccaccaaggcgcagaggaagcagcagatggcc
gaggaaatggtggaggctgcgggcgaagacgagcgggagctggccgcggagatggccgca
gccttcctgaacgagaacctgccggagtccatcttcggcgcccccaaggcagggaacggg
cagtgggcctccgttatcagggtgatgaaccccatccagggaaacaccttggatctggtc
cagctagagcagaacgaagccgccttcagcgtggccgtgtgccgcttctccaacacgggc
gaggactggtacgtgctggtgggggtggccaaggacctgatcctgaacccgcgctcggtt
gctgggggattcgtctacacgtacaagctggtgaacagcggcgagaagctggagttcctg
cacaagacccccgtggaggaggttcctgcagccatcgctcccttccaaggacgagtcctg
atcggggtcgggaagctgctgcgtgtgtacgacctgggcaagaaaaagctgcttcggaag
tgtgagaacaagcacatcgccaactacatctgcgggatccagaccatcgggcacagagtg
atcgtgtcggacgtccaggagagcttcatctgggtgcgctacaagaggaacgagaaccag
ctcatcatcttcgccgacgacacctacccgcggtgggtcaccacggccaccctcctggat
tacgacaccgtggccggagccgacaaattcggcaacatctgcgtggtgaggctgcctccc
aacaccaacgacgaggtagacgaggaccccacaggcaacaaagctctctgggaccgcggg
ctcctgaacggggcgtcgcagaaggccgaagtgatcatgaactaccacgtgggagagacg
gtgctctcgctgcagaagaccacgctgatccccggcggctccgaatctctcgtctacacc
accttgtcaggggggatagggatcttggtccccttcacttcccacgaggaccacgacttc
ttccagcacgtggagatgcacttgaggtcggagcacccccctctctgcgggcgggaccac
ctcagtttccgctcctactacttcccggtgaagaacgtgatcgacggggacctgtgcgag
cagttcaactcgatggagcccaacaagcagaagaacgtggctgaggagctggaccggacg
ccccccgaggtgtccaagaagctggaggacatccgcacgcgctacgccttctga

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