KEGG   Oxyura jamaicensis (ruddy duck): 118173100
Entry
118173100         CDS       T11549                                 
Symbol
TMF1
Name
(RefSeq) TATA element modulatory factor
  KO
K20286  TATA element modulatory factor
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oja04131]
    118173100 (TMF1)
Membrane trafficking [BR:oja04131]
 Endosome - Golgi transport
  Rab GTPases and associated proteins
   Rab associated proteins
    118173100 (TMF1)
SSDB
Motif
Pfam: TMF_TATA_bd TMF_DNA_bd SlyX CCDC39
Other DBs
NCBI-GeneID: 118173100
NCBI-ProteinID: XP_035193241
LinkDB
Position
12:complement(join(16640540..16640683,16641498..16641623,16642091..16642237,16642835..16642945,16644025..16644117,16644196..16644265,16644562..16644754,16645157..16645313,16645492..16645584,16646073..16646229,16646400..16646566,16647116..16647258,16647887..16647992,16648263..16648389,16649239..16649342,16650456..16651687,16653063..16653204))
AA seq 1103 aa
MSWFNASQLSSFAKQALSQAQKSIDRVLDIQAEESPWPDAVIPDYSEGTNSLSGGWDTSS
WGLSSNTEPQNQPVSPTAITKPVRRTVVDESENFFSAFLSPTDVQNIQKNPVVSKPPAKS
QRPKEEVKSTLQESQHPSQLEVPVTTEAEVKDSSVAGLVDLKNLDIPKEKLEENSVLSAK
HEESTSEVPEKNVSALNLKEPEDALNEKSSTGGDGTGGVLDSTSQSLNAGTKDVGLETKE
QKTEDRQSNTPSPPISTFSSGTSTTSDIEVLDHESVISESSVSSRQEAADSKSSLHLMQT
SFQLLSTSACTDYNRLDDFQKMTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSGR
ACTSASVTVSPSAPKTETVDALKSKSEDLTDSPVVHAEEAEMEESGRSATPVNSEQPDVL
VATVQTDEEQVVKEETEPQQDVGEKSLEEDSEKQELKKMIDSLTEKLEKRETQLLSTSKE
KARLEEAYDNLKDEVFRMKEETSSISSLKEEFAQRIADAEKKLQLACKERDAAKKEVKTV
KEELATRLNTNETAELLKEKEEQIKGLMEEGEKLSKQQLHNSNMIKKLRAKEKERESINT
KQNKKIKELEEELQHLKEVLDGKEDLEKQHRDNIKQLNNVVERQEKDLAKLQAEVEDLEE
RNRSVQAALDSAYKELADLHKANATKDSEAQEAALSREMKAKEELGLALEKAQDEARQQQ
EALAIQVSDLRLALQRAEQQAAGKEDYLRQEISELQQRLQEAESRNQELSQSVTSATRPL
LRQIENLQATLGAQTSSWEKLEKNLSDRLGESQTLLAAAAERERAATEELLSNKIQMSST
ESQNSLLRQENTRLQAQLEVERNKLKKMEEENSRYEVELEGLKDEYAKTLEDAKKEKTLL
ATQLEMEKMKVEQERKKAILVQEAAKEKDRKSFTAETVSSTPSISRSSSISGVDMAGLQT
SFLSQDDSHDHSFGPVATSGSNLYDAIRMGAGSSIIENLQSQLKLREGEISHLQLEIGNL
EKTRSIMAEELVKLTNQNDELEEKVREIPKLRAQLKDLDQRYNTILQMYGEKAEEAEELR
LDLEDVKNMYKTQIDELLKQRQN
NT seq 3312 nt   +upstreamnt  +downstreamnt
atgagctggttcaacgcctcgcagctgtctagcttcgccaagcaggcgctgtcgcaggcg
cagaagtccatcgaccgggtgctggacatccaggccgaggagagcccctggcctgacgcc
gtcatccccgactacagcgagggaacaaattctctaagtggaggatgggatacatcttca
tggggtctaagttcaaacacagaaccacagaatcagccagtatcaccaacagcaatcacc
aaaccagtgaggagaacggtcgtagatgaatctgaaaacttcttcagtgcctttctctct
ccaacagatgttcagaatatacagaaaaatccagtggtgtccaaacctccagccaaatca
cagcgacccaaagaggaggtgaaaagcactttacaggagtctcagcaccccagtcagctg
gaagtacctgtgacgacagaggcagaagtgaaggattcctccgtagctggcctagtggac
ttgaaaaatcttgatattcccaaggagaaactagaagagaattctgtgctcagtgccaag
catgaagaaagcacgagtgaggttcctgagaaaaatgtgtctgctctaaacctgaaagaa
cctgaagatgctctcaatgaaaaatccagcacagggggggatggaacgggaggcgtactg
gatagcacttcacagtctcttaatgcaggtacaaaagacgtgggtttggaaactaaggag
caaaaaaccgaggacaggcaaagcaatacgccgtcacctccaattagcactttctcttca
gggacatccaccactagtgatattgaggttttggaccacgaaagtgtaataagtgagagc
tcagtaagttcgagacaagaagctgcggactcgaaatccagtctccacctaatgcaaaca
tcatttcagcttttatctacgtctgcctgcacagattataatcgtttagatgactttcaa
aaaatgaccgagagctgctgctcctcggatgcttttgaaagaatagattcgtttagcgta
caatcgttagatagtaggagtgtcagtgagatcaattcagacgacgaattatcaggcagg
gcttgtacttcagcatctgtcactgtcagtccttctgcgccaaagacagaaacggttgat
gccctgaaaagtaaatctgaagatctaactgacagtcccgtggtacatgccgaggaagct
gagatggaagagagtggcagaagtgcgacccctgttaattccgagcagccagatgttttg
gttgctactgtacaaactgatgaagaacaggttgtgaaagaggagacggagccgcagcag
gatgttggtgaaaaatcgctggaagaggactctgaaaagcaagagcttaaaaagatgatc
gattcattaacagagaagctggagaagagagaaacgcagttactaagtactagtaaagaa
aaggcacgcctggaagaggcttatgataacctaaaagatgaagtgttcagaatgaaagaa
gagaccagtagcatttcatctcttaaagaggagtttgctcagcgaatagcggatgctgaa
aagaagctccagcttgcatgcaaggaaagagatgcagctaaaaaggaagtaaagactgtt
aaagaagaattggctactagacttaatactaatgaaactgctgaattactgaaagaaaaa
gaagaacagatcaaaggattgatggaggaaggagaaaaactttccaaacagcagctacac
aattccaacatgattaagaaattaagagcaaaggagaaagaaagagaaagtattaataca
aagcagaacaaaaagattaaggaactggaagaagagttgcagcatctaaaagaggtactt
gatggcaaggaagaccttgagaagcagcatcgagataatattaaacaactgaacaatgtt
gttgagagacaagaaaaggatcttgctaagcttcaggcagaagtggaagaccttgaagaa
cggaacagaagtgtgcaggcagcactcgacagtgcgtacaaggaacttgcggatcttcat
aaagctaatgctacaaaggacagtgaggcacaagaagcagccctaagtcgggaaatgaag
gcaaaggaagagcttgggttagctctggagaaggcccaggatgaggcacgacagcaacaa
gaagctttggcaattcaggtatcagacctgaggctagcattgcaacgtgcagaacagcag
gcagcaggaaaagaagattatttacgccaggaaatcagtgaactacaacagagactccag
gaagcagaaagccggaaccaagaactaagtcaaagcgttacatctgctactcgaccacta
ctccggcagatagaaaatttgcaagccacactgggagcacaaacctcttcatgggaaaaa
ctggaaaagaacctttctgacagacttggtgagtctcaaactcttctagcagcagctgct
gagagagaacgggctgctacagaggagcttctgtctaataaaattcagatgtcttctacc
gagtctcagaatagtcttttaaggcaagaaaatactcgccttcaggctcagctggaagtg
gagagaaacaaattgaagaaaatggaagaagaaaacagtaggtacgaagttgaactagaa
ggactcaaagatgaatatgcaaaaaccttggaagatgcaaagaaagaaaagacactgcta
gctactcagttagaaatggagaaaatgaaggttgaacaggaaagaaagaaggccattctt
gtacaagaagcagcaaaggagaaggatcggaagtcatttacagctgaaacagtttcaagc
actccaagtatttcacgttctagttccataagtggagttgacatggcaggtcttcagaca
tctttcctctcacaggatgattctcacgatcactcatttgggccagtagctactagtgga
agtaatctttatgatgctataaggatgggagcaggttcaagtataattgaaaaccttcaa
tcacagctaaaactaagagaaggagagatttcacatctacagctggaaattgggaacctt
gaaaaaactcgatcaataatggcagaagaattggttaaattaacaaatcaaaatgacgaa
cttgaagaaaaagtgagggaaataccaaaattgcgtgcacagttaaaggacttggatcaa
agatacaatacaattcttcagatgtacggagagaaagcggaggaagctgaagaactacga
ttagatctggaggatgtgaaaaacatgtacaagactcaaattgacgaacttttaaagcaa
agacaaaattaa

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