KEGG   Oxyura jamaicensis (ruddy duck): 118174148
Entry
118174148         CDS       T11549                                 
Symbol
CPSF4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03015  mRNA surveillance pathway
oja05164  Influenza A
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118174148 (CPSF4)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    118174148 (CPSF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oja03021]
    118174148 (CPSF4)
   03019 Messenger RNA biogenesis [BR:oja03019]
    118174148 (CPSF4)
Transcription machinery [BR:oja03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     118174148 (CPSF4)
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     118174148 (CPSF4)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_3 zf-CCCH_2 zf-CCCH_12 zf-CCHC zf-CCCH_4 zf-CCCH_RBM22 zf-CCCH_DUS3L zf-C3H1 zf-CCHC_3 Nab2-like_zf-CCCH_
Other DBs
NCBI-GeneID: 118174148
NCBI-ProteinID: XP_035195167
LinkDB
Position
14:complement(join(3542400..3542468,3544038..3544130,3545031..3545103,3545557..3545650,3545803..3545898,3546691..3546843,3547384..3547434,3548349..3548451))
AA seq 243 aa
MQELIASVDHIKFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPTCKFMHPRFELPMGTTEQPP
LPQPTQTQQKRTPQVIGVMQSQNNNTGNRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFL
SGQ
NT seq 732 nt   +upstreamnt  +downstreamnt
atgcaggagctcatcgccagcgtggatcacatcaagttcgacctggagctggccgtggag
cagcagctgggggcgcagccgctgccttttcccggcatggacaaatcaggtgcagctgtc
tgtgaattttttttaaaagcggcctgtggaaaaggaggcatgtgcccattcagacacatc
agcggggaaaagacagttgtttgcaaacactggctacgaggactgtgcaaaaagggagac
cagtgcgagtttctgcatgagtacgacatgaccaagatgcctgagtgttacttctactcc
aaatttggggaatgcagtaacaaggaatgcccattcttgcacatcgacccggaatctaag
atcaaagactgtccctggtatgacagaggcttctgtaaacatggtcccctctgcagacac
cgacacactcgaagagtcatttgtgtgaattacctagtcggattctgtccagagggacct
acctgtaaattcatgcaccctcggtttgaactgcctatgggaaccacagagcaaccacca
ctgcctcagccgacacaaacacagcaaaagaggacgccccaagtcatcggagttatgcag
tctcaaaataacaacactgggaacagaggaccccggccgttggagcaagtaacctgttac
aagtgtggtgaaaaaggtcattatgccaacagatgcaccaaaggacatctggcctttctc
agtggacagtga

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