Oxyura jamaicensis (ruddy duck): 118175510
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Entry
118175510 CDS
T11549
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118175510 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oja03019
]
118175510 (NUP188)
Messenger RNA biogenesis [BR:
oja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118175510 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
118175510
NCBI-ProteinID:
XP_035197712
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Position
17:5871049..5898393
Genome browser
AA seq
1737 aa
AA seq
DB search
MAAGGLCARSSRELCTILLGRSALREPAQIAAELNKHWQRLLEGLSYYKPPSTTSAEKIK
ADKDVAAPLKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERICILRCVLHLLTYFQDERHPYTAQYFQCVEKLEKELIPNYRKQYEELYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMGPDDLLEFAKMFKEQ
GFGTRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDALHERALDDRTEEHKLANSSHM
HQEMDSQLLQLGDVPHHAPVLLAWALLRHTINPEESTNVIRRMGSNAIQLNVFQYLTKLL
QSLSSGGNNCTVSTACMCIYGLLSFVLTSLELHTLGNQQDITDAACEVLAASSIPQLFWK
TEPTAGLGIILDSVCGMFPHLFTPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQAPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPVDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPVSSMNHMISAEGMNAG
GYGNLLMSIEQPQGEYSVTISFLNLITTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKW
RYNSHGVREKIGCLILQLIHAILNLCPEMDPRSSSAPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQPSSDETQGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQ
HGAQGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
RLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPP
PSETSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLKNFSDKKRFGYWSEYVKLLA
YHVAETEGSSCASVTEYQMLISAWRMLLIISTSHADIMHLTDSAVHQQLFLDVLNGTKVL
LLVPMSVSCLQLGSMLCTLLLILLKQWKSELGSVDKIISSLTQILEGILQADQQMMEKTK
AKVFSALITVLQMKEMTVNEIPQYSQLVLSVCETLQDEVIALFDQTRHSLTLGDAADDKD
IMETDDVSRVKHKDQRDGVCVLGLHLAKELCEADEDGDYWLQITRKVPVLPTIFAALEIS
LRVKQNLHFTEASLHLLLTLARTQQGAAAVAGAGVTQSVCLPLLSVYQLSSNGAIQTSAS
SRKSLDAPSWSGVYRLSMSLMERLLKTLRYNFLTEAMDFVGVHQERILQCLNAVRTVQSL
ACLEEADHTVGFILQLSNFTKEWHFHLPQLMRDTQVNLCYLCQACTSLLHSRKMLQHYLQ
TKNGDSLPSSVTPQVQRNPQASSKHPSPESEAAEQKALLMVQYSLLKILSKSLAALRHFT
PDVCQILLDQSLDLAEYNVLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGELDKKKE
LLPQAAGLNMQEGTKTLKSLLMFTIENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgggctgtgcgcgaggagcagcagagaattgtgtacaattctcctgggg
agatcagctttaagagaaccagcacagattgcagcagaactgaacaagcactggcagagg
ttgttagagggactttcatactacaaacctccgagtacaacttcagcagaaaaaataaaa
gctgataaagatgtggctgctccactaaaagaactgggtctgagggtcagcaagtttttg
ggtttggatgaagagcagagtgtgcagttgttacagtgttatcttcaagaagattacaga
ggaacaagagactccctgaagacagttcttcaggatgaaaggcagagtcaggctctgatg
ctgaagcttgctgactattactacgaagagaggatctgcattctgcgctgtgtcctccat
ctactcacttattttcaggacgagaggcacccttatacagcgcaatacttccagtgtgtc
gaaaagttggaaaaggaactaattcctaattaccggaagcagtatgaagaactgtacaaa
gcagaagctcctacatgggaaacacatggaaatctcatgacagagcgtcaggtttctcgc
tggtttgtgcaatgcctccgtgagcagtccatgctgctggaagtcatcttcctctactat
gcatactttgaaatgggaccagatgatcttctagaatttgcgaagatgttcaaagaacag
gggttcggcactaggcaaaccaacagacacttggtagatgagagcatggatcacctggtg
gatcgtatcggctactttagtgctcttatcctggtggaaggcatggaaattgacgccctc
catgaacgagctttggatgataggacagaggagcacaaattagccaatagttcacatatg
caccaggaaatggacagtcagctgctgcagctgggagatgtcccacatcatgctccagtg
cttttggcttgggcgctgctccgtcataccataaacccagaggaatcaacaaacgttatc
aggagaatgggcagcaatgctatccagctgaatgtgttccagtatctgacaaaacttttg
caatcattgagcagtgggggcaataattgtactgtcagcacagcttgtatgtgtatttat
gggcttctttcctttgtcctgacatcactggagttacatacgttgggcaatcagcaggat
ataactgatgctgcgtgtgaagttctggcggcttccagcattcctcagctcttctggaag
acggaaccgactgcaggtctgggcattatcctggacagtgtgtgtgggatgttcccccat
ctttttactcctctccttcagctgctccaagcccttgtgtcagataaatctactgcaaaa
aaggtatacagtttcctggataaaatgtccttttatattgaactgtacaagcataaacct
cctgatgtgatctctcacgaagatggcacgctttggcgaagacaggctccaaagctcctc
tatcctctcggactaggtcagacaaatctgcggatacctcagggaacagtgggccaagtg
atgctggatgatcgagcttatttggtacgatgggagtattcgtacagcagctggacgctg
tttacctgtgagattgaaatgctgctccatgttgtttcgacagcagatgtgattcagcat
tgccagagggtgaagcccatcatcgatctggttcataaagtcatcagcactgatgtgtcg
atagcagattgccttctgccgatcacatcgcgaatctacatgctgctgcagaggctaaca
actgtaatctctccccctgtggatgttattgcttcttgtgtcaattgcttgacagttctg
gctgctcggatgccagccaaggtttggactgaccttcaccatacggggttcttgccgttt
gttgccaatccagtgtccagtatgaatcacatgattagtgcagagggaatgaatgctggg
ggctatggaaacctgttgatgagcatcgaacagcctcaaggggagtacagcgttaccatc
tccttcctgaacctgatcacaactctcgtccggggacaacttggtagcacccagagccaa
ggacttgtgccctgcattgtgtttgtcctgaaggagatgttaccaaattaccacaaatgg
cgttataactctcatggagtgagagagaaaattggatgccttattctgcagttgattcat
gctatactgaatttatgccctgaaatggatcctcggagcagcagtgcccctagccttcag
tccttgtgcatcttcagcctggccaacactgaagcagggcaagctgtcattaacatcatg
ggaatcggcgtggacactatcgatatggtaatggcttcccagcccagtagtgatgagacc
caaggccaaggtcaactgctgatacaaacagttaagctggcattctcggttaccaataac
gtcatacggctgaagcccccctccagcgtggtgtctccgttagagcaggcccttactcag
catggtgctcagggaaacaaccttattgcggtcttggccaaatacatctaccacaagcac
gaccctgcacttccacgcctggccatccagctgctcaagcgactggctacggttgctccc
atgtctgtttacgcctgtcttggtagtgatgctgctgcgatccgtgatgccttcctcacc
cgcctgcagagcaagattgaggacatgcgtattaaggtcatgatactggaattccttaca
gttgcagtggagacacagcctggactcattgaactgttcctgaacttggaagtcaaggat
ggcagtgatgggtcaaaggagttcagcttaggggagtggagttgcctccaagtagtctta
gagctgatagactccaaacaacaggagaggtactggtgcccgcccctcttgcatcgtgct
gccattgccttcctgcatgccctgtggcaggaccgccgagatagtgccatgctggttctg
aggacaaagccaaagttttgggaaaatttgaccaatccactgttcgggacccttcctcca
ccttcagaaacgtcagagctcagtgtcttggacacctgtgcattaatcatgaaaatcatc
tgcttggagatctactatgttgtcaagggctcactggatcagtcgctgaaagacacgctg
aagaatttctccgacaaaaagcgctttggttattggtcagagtatgtgaagttactggca
tatcatgtggcagagacagagggtagcagctgtgcctccgtgacagaatatcaaatgctg
atctcagcctggaggatgctgctcattatttctactagccatgcagatataatgcatctg
actgattctgcggttcatcagcaattgtttctggatgtgctaaatgggaccaaggttttg
cttctagttcccatgtcggtatcctgtctgcagctggggtctatgctatgtacccttctt
ctgatcctgctgaagcagtggaagagcgagttgggttctgtggataaaatcataagctcc
ttgacgcagattctggagggaatactacaggcagatcagcagatgatggagaaaacaaaa
gccaaagtgttctcagctcttatcactgtgctgcaaatgaaggagatgacagtgaatgag
atcccacagtactcccagctggtgctcagcgtgtgtgaaacactccaagacgaggtcatt
gccctgtttgatcagactcggcacagtctgaccctgggagatgctgcagatgacaaggac
atcatggaaacagatgatgtctcccgggttaaacacaaggaccagcgagatggggtatgt
gttttgggtctgcatctggcaaaagagctctgtgaagctgatgaagatggagactactgg
ctacagataactaggaaagtccctgtacttcctactatttttgctgctttggagatcagt
ctgagagttaagcagaaccttcacttcacagaggcctcattacatttactgctgacttta
gcaaggacgcaacagggagcagcagcagtggctggagctggtgtcacacagagtgtctgc
ctccccctcctgagcgtgtaccagctcagcagtaatggagccattcagacatctgcttca
tctcgaaagtctttggatgctccctcttggtctggtgtttaccgtctctccatgtccctg
atggagcgtctgcttaagacgctgagatacaacttcctgacggaagcaatggacttcgtt
ggtgtccatcaggagaggatccttcagtgcctgaatgcagtacggacagtgcagagtttg
gcctgtctagaagaggctgatcacactgttggcttcattctccagctctcaaatttcaca
aaggagtggcatttccacctgccgcagcttatgagggacacgcaggtgaatctgtgttac
ctgtgtcaggcctgtacctccctcctgcacagccgcaaaatgctccagcattacctccag
acgaaaaatggtgactcccttccatcaagtgtgactccacaagtgcagcgtaatccccaa
gcctcttccaaacatcccagccctgagtcagaggcagcggagcagaaggcgctgcttatg
gtgcagtacagcctcttgaagatcctcagcaaatctcttgctgccctgcgccatttcacc
cccgatgtctgccagatactccttgatcagtcactggaccttgctgagtacaacgtgctc
tttgttttgagtttcaccacgccagcttttgattcagatgtcgcgccttcctttgggacc
ctccttgccacagtcaatgtggccctgaacatgctgggagagctggataagaagaaggaa
cttctccctcaggctgcagggctgaatatgcaagagggaaccaaaaccctcaagtctctg
ctcatgtttacaatagaaaactgtttctacctgctcatctcccaggccgtgcggtacttg
agagacccagctgtgcatccccgtgataagcagcgaatgaaacaggagctcagctctgag
ctgagtaccctgctttccagcctgtctcgttacttccgccgtggtggtccctcttcacct
gccagcggggtccttccctctccccagggaaagtctgcctccaagctgggtcctgagggg
caggagcctttgtttcagctcgtgcaggcctttgtccggcacgtgcagagatag
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integrated database retrieval system
