Oxyura jamaicensis (ruddy duck): 118175542
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Entry
118175542 CDS
T11549
Symbol
WHRN
Name
(RefSeq) LOW QUALITY PROTEIN: whirlin
KO
K21879
whirlin
Organism
oja Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
oja03037
]
118175542 (WHRN)
Cilium and associated proteins [BR:
oja03037
]
Primary cilia and associated proteins
USH complex and associated proteins
118175542 (WHRN)
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GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
HHD_RTEL1
CCM2_C
USH1C_N
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
118175542
NCBI-ProteinID:
XP_035197774
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All DBs
Position
17:complement(2632479..2681388)
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AA seq
911 aa
AA seq
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MSSEPDSASLRSSSSSSGSAGPAPAPPRPLSSNVRRLHQALTALLSEAERERFVLCLNAY
HGRRNVCDLVRSLRALLDGPRRRQLLPLLRLVLPRSDQLLFDQYTAEGPYLPXPPPPQPP
GELRQVSLRRSKAHQGLGFSIRGGAEHGVGIFVSLVEPGSLAEREGLRVGDQILGVNGKP
LDRATHAEAVKVLKGCKKLNLSVHSVGRIPGGYVTNHIYTWVDPQGRSVSPPLGLPHHQN
SSLRKDSEKRSHLQLLQEGDEKKVNLVLNEGKSLGLMIRGGAEYSLGIYITGVDKGSEAE
STGLKVGDQILEVNGRSFLSIPHDEAVKLLKSSRHLIMTVKDIGRLPHARTTVDETRWIA
SSQIGETLVNSAGAVGDHSAEAAARPVFYRGLAGSQVTLSSMVNQTRVMLEEQARHLLNE
QERATMGYYLDEYKEGNISVDALVMALFELLNTHAKFSLLSEVRGVISPQDLDRFDNLVL
KREIESMKARQPSGPSIGTDSYSMMSYSDTVSSSSSHFTSTTVSSARNTSELEGGGDGHQ
SSINTLPDISLDDLSSFPEEPPNFKPPPPPSAPQMLDPSAAQHRNPAKDKPKRPSSESSQ
SGLFFVAPRNPTPPLNHSEQDTASMTSTATTSTEESAPSPIYATISPSLHSSRRQMDAQL
SLVSQHPIGPFPRVQSPTRLKSPIAEGPAAAGHHSPTSPSPPPPPAHPAPPPPDRGSPRA
VANQHFIMVEVHQPNSEPDVNEVRPLPQARASTLSQLSDSGQTLSEDSGVDIGEVEMGGK
DKSRQPVPGKSRSLKEAARSEAAAEGASKPPGLLEPTSCLIRVSKSAPTLGIAIEGGANT
RQPLPRIVTIQRGGSAHNCGKLKVGHVILEVNGTGLRGKEHREAARIIAEAFKLKEKDYI
DFLVTEFNVAL
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgagctcggagccggactcggcgtcgctgcgctcctcgtcgtcgtcgtcgggctcggcg
gggccggctccggctcccccccggccgctgtcctccaacgtgcggcggctgcaccaggcg
ctgacggcgctgctgagcgaggcggagcgggagcgcttcgtgctgtgcctcaacgcctac
cacggccgccgcaacgtctgcgacctggtgcgctccctgcgagccctcctcgacgggccc
cgccgccggcagctcctgccgctgctgcgcctcgtcctgccgcgctccgaccagctgctc
ttcgaccagtacacggccgaggggccctacctgcccccccccccgccgcagccccccggg
gagctccgccaggtcagcctgcggcggagcaaagcccaccaggggctgggcttcagcatc
cgcggcggcgccgagcacggcgtcggcatcttcgtgtcgctggtggagcccggctcgctg
gccgagcgggaggggctgcgggtcggcgaccagatcctgggggtcaacggcaagcccctc
gacagggcgacccacgccgaggccgtcaaggtcctgaaaggctgcaagaagctgaacctg
tccgtgcactcggtgggccgcatccccgggggctatgtcaccaaccacatctacacctgg
gtggacccgcagggccgcagcgtgtccccgccgctgggcctgccgcaccaccagaacagc
tcgctgcgcaaggacagcgagaagaggagccacctccagctcctgcaggagggcgatgag
aaaaaggtcaatctggtcctgaatgaagggaagtccctggggcttatgatccgaggaggg
gcagaatattccttgggcatctacatcaccggtgtggacaaaggctccgaagcagagagc
acgggcttaaaggtgggagaccagatcctggaggtgaacggccggagcttcctcagcatc
ccccacgacgaggcggtgaagctgctcaagtcctcccgccacctcatcatgacggtgaag
gacatcgggaggctgccccacgcgcgcaccaccgtggacgagaccaggtggatagcaagc
tcccagatcggagagaccctggtcaactcagcaggggcggtgggcgatcactctgcagag
gcggcagccaggcctgtgttttaccggggcctggcgggctcgcaggtaacgctgagcagc
atggtgaaccagacccgagtcatgctggaggagcaagcgcggcacctgctgaacgagcag
gagcgagcgaccatggggtactacctcgatgagtacaaggaaggcaacatctccgtggat
gctctggtcatggcgctctttgagctgctcaacacacacgctaagttctcactgctttca
gaggtgcggggcgtgatctccccgcaagaccttgaccgcttcgacaacctggtgctgaag
agagagatcgagtccatgaaggcccggcagccctcggggcccagcatcggcaccgactcc
tactccatgatgtcctacagtgacaccgtctcttcctccagcagccacttcacctccaca
actgtcagctcggcccggaacacgtcagagttggagggaggtggagacggccaccagagc
agcatcaacaccctgccggacatctccctggatgacctttcgtccttcccggaggagcca
cccaacttcaagcctccccctcctccttcagccccccagatgctggacccctccgctgcc
cagcaccggaacccagcgaaggacaaacccaagcgcccgtcctccgagtcctcccagtca
ggcctcttcttcgtggccccccgaaaccccacgccccctcttaaccactccgagcaggac
acagccagcatgacctccaccgctacgacatccaccgaggagtccgccccgagccccatc
tatgctaccatttccccgtccctgcacagctcccggcgccaaatggatgcccagctctcc
ttggtcagccagcaccccatcgggcccttccccagggtccagtccccaacgaggctgaag
agccccattgcagagggtcctgcagccgctgggcaccacagccccacttccccgtcccct
ccgccccccccagcgcaccccgcgcccccgccacccgacaggggcagcccgcgggccgtg
gccaaccagcacttcatcatggtggaggtgcaccagcccaacagcgagcccgacgtcaac
gaagtcaggcccttgccccaggccagagcctccacgctgtcccagctgtcggacagcggg
cagaccctcagcgaggacagcggcgtggacatcggcgaggtcgagatgggcggcaaggac
aagagccggcagccggtccccgggaaaagccgaagcctcaaggaggccgccaggagcgag
gcggcggcagagggggcctccaagccgccggggctcctggagcccacctcgtgcctgatc
cgggtgtccaagagcgcgccgaccctgggaatcgccatcgagggtggagcaaacacgcgg
cagccactgccccgcatcgtcaccatccagcgcgggggctcggcacacaactgcgggaag
ctgaaggtgggccacgtcatcctggaggtgaacggcaccgggctgcggggcaaggagcac
cgcgaggccgcccgcatcatcgccgaggccttcaagctgaaggagaaggactacattgac
ttcctcgtcacagagttcaacgtcgccctgtag
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