KEGG   Oxyura jamaicensis (ruddy duck): 118176128
Entry
118176128         CDS       T11549                                 
Symbol
PRPF8
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8
  KO
K12856  pre-mRNA-processing factor 8
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118176128 (PRPF8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oja03041]
    118176128 (PRPF8)
Spliceosome [BR:oja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    118176128 (PRPF8)
 Complex C
   U5 SnRNP specific factors
    118176128 (PRPF8)
SSDB
Motif
Pfam: PROCN PRP8_domainIV U6-snRNA_bdg PRO8NT U5_2-snRNA_bdg PROCT RRM_4 JAB
Other DBs
NCBI-GeneID: 118176128
NCBI-ProteinID: XP_035198751
LinkDB
Position
19:complement(join(6087612..6087766,6088450..6088652,6088854..6088993,6089318..6089458,6089810..6089951,6090035..6090274,6090626..6090819,6091068..6091241,6091385..6091498,6092086..6092214,6092450..6092687,6093279..6093470,6094080..6094240,6094465..6094611,6094805..6094934,6095230..6095399,6095642..6095777,6096258..6096437,6096631..6096878,6096964..6097080,6097403..6097613,6097870..6098016,6098541..6098779,6098994..6099181,6099510..6099702,6099827..6099953,6100309..6100472,6100562..6100768,6100881..6101077,6101466..6101595,6101707..6101841,6102123..6102242,6102551..6102740,6102811..6102930,6103112..6103302,6104250..6104355,6104439..6104564,6104841..6105053,6105643..6105861,6105962..6106126,6106825..6106910,6106912..6106994,6107072..6107171))
AA seq 2335 aa
MAAVFPYRGACAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETGEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq 7008 nt   +upstreamnt  +downstreamnt
atggccgccgtcttcccgtaccgcggggcctgcgccccggtgcccagcccgctggcgccg
ctgcccgactacatgtctgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctatgccgagaagaggaaattcggcttcgtggacgcgcagaaggaggat
atgccccccgagcacgtccgcaagatcatccgcgaccacggcgacatgaccaataggaag
ttccgccacgacaagcgcgtctacctgggtgctctgaagtacatgcctcatgctgttctg
aagctcttggagaacatgcctatgccctgggagcaaatcagagacgttccagtcttgtac
catatcacgggagccatctcttttgtgaatgagattccctgggtcatagagccggtgtac
atcgctcagtgggggtcgatgtggattatgatgaggcgagagaagagggataggcgtcac
ttcaagaggatgaggttccccccctttgatgacgaagagccacctctggattatgccgat
aacatcctggatgtggagcccctggaagcaattcagcttgagctggacccagaggaagat
gcccctgtgctagactggttctacgaccaccagccactgaaagacaacaggaagtatgtc
aatggttccacgtaccagcggtggcagttcaccctgcccatgatgtccacgctgtaccgg
ctggccaatcagctgctcaccgacctggtggatgacaactacttctatttgtttgacctg
aaagcattcttcacctccaaggcactgaacatggctatccctggaggtcccaagttcgag
cctcttgttagagatatcaatcttcaggatgaagactggaatgaatttaatgacatcaac
aaaattatcatcaggcagcccatcaggacagagtataaaattgctttcccgtacctgtac
aataacctgccccaccacgtccacctgacctggtatcatactccaaatgttgttttcatt
aaaactgaagatcctgatctcccagctttttacttcgatcccctgatcaaccccatttca
cacaggcattctgtaaagagtcaggaaccattacctgatgatgacgaagagtttgagtta
ccagagtttgtggaacctttcctgaaggacactccactctacacagacaacacagccaat
ggcattgccctgctgtgggctccacggcccttcaatttgaggtctgggagaactcgaaga
gctcttgacatcccactggtcaaaaactggtatcgtgagcactgcccagcaggccagcca
gtgaaagtgcgagtctcctatcagaagttactgaaatactatgttctgaatgcgctcaag
cacaggccccccaaggcccagaagaagaggtacctgttccgttccttcaaggctacaaag
tttttccagtcaacgaagctggactgggtggaagtgggcttgcaggtgtgtcgccagggc
tacaacatgctgaacctgctgatccacagaaagaacctgaactaccttcacttagattac
aacttcaacctgaagccagtgaagaccctcaccaccaaggaaaggaaaaaatcccgtttc
ggtaacgctttccatctgtgccgagaggttctgcgcctgactaaattggtggtggacagc
cacgtccagtacagacttggaaacgtggatgcatttcagttggcagacggcttgcagtac
atctttgcccatgtaggtcagctgacaggaatgtacagatacaagtacaaactgatgcgg
cagattcgcatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtgtggctgttcttc
atgaggggcatcacgccactgctggaacgctggctggggaatctgctagccaggcagttt
gaaggccgtcactcaaagggtgtagcaaagacagtcacaaagcagcgcgtggagtctcac
tttgacctggagctgagagcagccgttatgcatgacattctggacatgatgccagaaggg
atcaaacagaacaaagccagaaccatcctgcagcatctgagcgaggcttggcggtgctgg
aaggccaatatcccctggaaggttcctgggcttcccactcctattgagaacatgatcctg
aggtacgtgaaggcaaaagctgactggtggacaaatacagctcactacaatagagagcgt
atccgtcggggtgccactgtggacaagactgtctgtaagaagaacctgggccggctgacc
agactctacttaaaagctgagcaggaacgacagcataattacttgaaggatgggccttac
atcacagcagaagaggctgttgctgtgtacacaaccacagtgcactggctggaaagcagg
aggttctcccccattccattcccacctctgtcctacaagcatgataccaagttgctcata
ttagctctggagaggctgaaggaagcttacagtgtgaaatctcgcctgaatcagtcacag
agggaggagttgggcttgattgaacaggcttatgataatcctcacgaagctctgtccaga
atcaagcgacaccttttaactcagagagccttcaaggaggtgggtattgagttcatggat
ctctacagccacttggttcctgtttatgacgttgagcccttggagaaaatcacagatgct
tatctggatcagtacttgtggtacgaggctgataagcgaagactcttccctccttggatc
aaacctgctgacactgaacctcctccactgttagtgtacaagtggtgccaaggcattaat
aacctgcaggatgtttgggaaacgggtgaaggtgaatgcaacgtcatgctggaatctcga
tttgagaagatgtatgaaaagattgacctgacattgctcaacaggctgttgcgtctcatt
gttgatcacaacatcgctgactacatgacagccaaaaacaacgtggtgataaactacaag
gacatgaatcacacgaactcctatgggattattcgtgggctgcagtttgcttccttcatc
gtccagtattacgggcttgtgatggacctactggtgctgggtctgcatcgtgccagcgaa
atggctgggcctccccagatgccaaatgacttcctcagcttccaagacattgcaactgag
gtggcccatcccatccgccttttctgcagatacatcgaccgcattcacatcttcttcagg
tttacagcagatgaggctagagacttgatccagcgctacctgacagagcatccagatccc
aacaacgagaatatcgtaggctacaacaacaagaaatgctggccccgggatgctcggatg
cgcctcatgaaacatgatgtcaacctgggtcgtgctgtattctgggatatcaagaaccgc
ctgcctcgatccgtcaccacagtacaatgggagaacagcttcgtctccgtttacagcaag
gataaccccaatttgttgtttaacatgtgtgggtttgagtgccgtattttgcccaaatgt
cgcaccagctacgaggagttcacgcacaaggatggtgtctggaacctgcagaacgaggtc
accaaggagcgcacagcccagtgcttcctgcgtgtggatgatgagtccatgcagaggttt
cacaacagagtaaggcagatcctcatggcctctggctctacaaccttcactaagattgtc
aacaagtggaacacagctctcattggcctgatgacatatttccgggaagctgttgtaaat
actcaggagctgcttgatttgctggtgaagtgtgagaacaaaatccagactcgaatcaaa
attgggctgaactccaagatgcctagccgctttccacctgtggtgttttacacccctaaa
gagctgggagggctgggcatgctctccatgggccatgttctcatcccacagtctgacctg
aggtggtccaagcagacagacgtcggcattactcacttccgctcaggaatgagtcatgag
gaggaccagctcatcccaaatttgtatcgttacatccagccatgggagagcgaattcatc
gactcgcagagggtatgggcagaatatgccctcaagcgacaggaggctatagcccagaac
aggcgtctgacactggaggatctggaggactcatgggaccgggggattcctcgtataaac
acgcttttccagaaggaccggcacaccctagcgtatgataaaggatggagagtcaggact
gacttcaaacagtatcaggtcctgaaacagaacccgttctggtggacacatcagcgccac
gacgggaagctctggaacctgaacaactaccgcacggatatgatccaggcacttggtgga
gtggagggcatcctggagcacactctcttcaagggcacttacttccccacgtgggagggt
ctgttctgggagaaggccagtggctttgaggagtccatgaagtggaagaagctgacaaat
gcccagagatctggtttgaatcaaattccaaacagaagattcactctgtggtggtctcct
accattaacagagccaacgtgtatgttgggtttcaggtgcagctggatttgacaggtatc
tttatgcatggcaagattcccacgctgaagatttctctcatccagattttccgagctcac
ttgtggcagaagatccatgagagcattgtaatggacttgtgtcaggtgtttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacaatccatcccaggaagtcatac
aagatgaattcctcatgtgcagatatccttctctttgcttcctataagtggaatgtgtca
cgtccgtcgttgcttgcagattccaaagatgtgatggacagcaccaccactcagaagtac
tggattgatatccagctgcgctggggagattatgattcccatgatattgagcgctacgca
agagccaagttcctggactacactacagacaacatgagtatctatccgtctcccaccggt
gtgctcattgccatcgacctggcctataacttgcacagtgcttacgggaactggttccct
gggagcaaacctctgatccagcaggctatggccaaaatcatgaaagcaaatcctgcgctg
tatgtgttgagagaacgaatccgcaaggggctgcagctgtactcatctgagcccacagaa
ccatacctttcctctcagaactatggagagctcttctccaaccagatcatctggtttgtg
gatgacaccaacgtgtacagagtgaccattcacaagacttttgaagggaatttgaccaca
aaacctatcaacggagccattttcatcttcaatcccaggaccggacagctcttcctgaag
atcatccatacatctgtgtgggcaggacagaaacgtctgggacagctggccaagtggaag
actgcagaagaagtggctgccttgattcgatcgcttcccgtggaggagcagcctaaacag
atcatagtgactcgaaagggcatgttggacccactcgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcagagttgcagctgcctttccaggcctgtctgaaagtggag
aagtttggtgatctcatcctgaaggctactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacggcattctcccgcttgattctgattctc
cgggcactacatgtgaataacgatcgagccaaagtgattctgaaaccagacaagacaacc
ataacagagcctcaccacatctggccaaccctgacagacgaggaatggatcaaggtggag
gtgcagctgaaagatctgatccttgctgactatggcaagaagaacaacgtgaatgttgca
tccctgacgcaatcggagatccgagacattatcctgggcatggagatctctgccccctct
cagcagagacagcagattgcagaaattgagaagcaaaccaaggagcagtcgcaactgaca
gccacgcagacccgcaccgttaacaaacatggggacgaaatcatcacctccacaaccagc
aactacgaaacccagactttctcctccaagactgagtggcgagtcagagcaatttcagct
gccaacctccacctgagaacgaaccacatttacgtttcatcagatgatataaaggaaaca
ggctacacctacattcttcccaagaatgtgttgaagaaattcatctgcatctccgatctg
cgggcccagatcgccggttacctgtatggagtgagccctcccgacaacccccaagtgaag
gagattcggtgcatcgtgatggtgccccagtggggaacacaccagaccgtgcatctcccg
gggcagctgccgcagcacgagtatctcaaggaaatggaacctctggggtggattcacacc
cagcccaatgagtccccgcagctgtcaccacaggatgtcaccacccatgccaaggtcatg
gctgacaacccctcctgggacggggaaaagaccatcatcatcacctgcagttttaccccg
ggctcctgcaccctgacagcctacaaactgaccccgagcggctacgagtggggcaggcag
aacacggacaaagggaacaaccccaagggctacctgccatcccattacgagagggtgcag
atgctgctctcagatcgcttcctcggcttcttcatggttccagcgcaagggtcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaagtccatcgcccctctcacttcctcaacttcgccctgctg
caggagggggaggtttactccgccgaccgggaggacctctacgcctag

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