Oxyura jamaicensis (ruddy duck): 118176327
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Entry
118176327 CDS
T11549
Symbol
SMG8
Name
(RefSeq) protein SMG8
KO
K18734
protein SMG8
Organism
oja Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oja03019
]
118176327 (SMG8)
Messenger RNA biogenesis [BR:
oja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118176327 (SMG8)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
118176327
NCBI-ProteinID:
XP_035199154
LinkDB
All DBs
Position
19:join(8258192..8258254,8258696..8260343,8261273..8261418,8261816..8262691,8264380..8264577)
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AA seq
976 aa
AA seq
DB search
MPLPGPVSLRELLLAAAAGAEGSGGAAAAGPGPGPGPGPGPSPSSPGEEEVCVVGIFGKT
ALQLCSEKAALVSTVCDRQVFPLFEPAEPEEAGDAAGSEGEPAAKDYNQLQAYYSQESRV
LYLVLTSICDTPQLLKACGDLAAAESRESAAGGPGPLPHAEAHEFWKHQEKLHCLSLLYL
FSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPSLKAAIKDCPVGKEWKLNCRPCPP
RLLFLFQLNGALKVDPLPSRGQDPCGHLEKPPPKKHSPKRRLQHALEDQIYRIFRKSRVL
TNQSINCLFTVPANQAFVYIVAGGAQDGEDPVAMLLDQLRSNCTMRETDSLLAPTLSGPR
RYQMMRHGRQQLSFYAESSSSSSSSSGQLVDCTLKEFLWQHVELVLSKKGFDDSVGRNPQ
PSHFELPTYQKWVAAALKLYEVTIEGKDDDPTSLTGELSSKIMGSIKVLEGYLDIDTKFS
ENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLNEDCY
KFWSNGHQLCEERSLTDQHCVHKFHLLPKAGEKPEADRNPPILYHNSRARSTGACNCGRK
QAPRDDPFDIKAANYDFYQLLEEKCCGKLEHINFPVFQPSTPDPAPARDESSPAPPEGEI
EKLKEKEPQTQGESTGLSLALSLGQSTGSLGTYPPDAQGGGDNAESHGQSGDSKSEKRPS
LVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKAYNFHTGLDQQGFIPGTNYL
MPWDIVIRTRTEDEGDLDTNSWPAPNKAIPAKRSAVVMGRGRRRDDIARAFVGFEYEDAR
GRRFMCSGPDKVMKVMGGGPKESAIKALNSDMPLYILSSTQGRGLKPHYAQFMRLFVVVP
DAPLQITLTPQVQPGPPPCPVFYPEKQEITLPADGLWVLRFPYAYVTERGPCFPPKESQQ
LMSYKVLRGILKAITQ
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgccggggccggtgagcctgcgggagctgctgctggcggccgcggccggcgcc
gaggggagcggcggggcggcggctgcggggccggggccggggccggggccggggccgggg
ccgtccccttcgtcccccggcgaggaggaggtgtgcgtggtgggcatcttcggcaagacg
gcgctgcagctgtgctccgagaaggcggccctggtgagcaccgtgtgcgaccggcaggtc
ttccccctcttcgagccggccgagcccgaggaggccggagatgctgcggggtcggagggc
gagccggcggccaaggactacaaccagctgcaggcgtactacagccaggagagcagggtg
ctgtacctggtgctcacctccatctgcgacacgccgcagttgctgaaggcctgcggggac
ctggcggctgcagagagcagggagagcgcggccggaggccccgggccactgccccatgcc
gaagctcacgagttctggaagcaccaggagaagctgcactgcctgagcctcctctacctc
ttttccgtctgccatatcctgctgctggtgcaccccacctgctccttcgacatcacctat
gaccgcgtcttcagggcgctggatgggttgcggcagaaggtgctgccctccctgaaggcc
gccatcaaggactgcccggtcggcaaggagtggaagctgaactgcaggccgtgcccacca
cgcctcctcttcctcttccagctcaacggggccctgaaggtggatcccctcccgagcagg
ggccaggacccctgcggccacctggaaaagccgccccccaagaagcactcccccaagagg
aggttgcagcacgccctggaggatcagatctaccgcatctttcgcaagagcagggtgctg
accaaccagagcatcaactgcctcttcaccgtgcctgccaaccaggcctttgtgtacatc
gtggctggcggggcccaggatggcgaggatccagtggccatgctgctcgatcagctgagg
agcaactgcaccatgagggagacggactcgctgctggctcccacgctgtcgggacccagg
aggtatcagatgatgcgccacggcaggcagcagctgtccttctacgcagagagcagcagc
agcagctccagctcctctgggcagctggtggactgcaccctcaaggagttcttgtggcag
catgtggagctggtgctcagcaagaagggctttgacgacagcgtggggaggaacccgcag
ccctcgcactttgagctcccaacctaccagaagtgggtcgctgcggctttgaagctgtac
gaagtgaccatcgaaggcaaagacgacgacccgacttctctcactggggaactgagctcc
aaaatcatgggcagcatcaaagtcttggaaggctatttagacatagacaccaaattctct
gaaaaccgttgccagaaagccctccccatggcccacagcgcctatcagtccaacctgccc
cacaattacaccatgacggtccataaaaatcagctggcgcaggccctgcgtgtgtacagc
cagcacgcccgcggcccggccttccacaagtacgccatgcagcttaacgaggactgttac
aagttctggagcaacgggcaccagctgtgtgaggagcgcagcttaactgaccagcactgc
gtgcacaagtttcatctgctgccaaaagcaggggaaaagccagaagcagacagaaatcct
ccgatcctgtaccacaacagccgggctcgttccactggtgcctgtaactgtggaaggaaa
caagctcctcgggatgatccctttgatatcaaagcagcaaattatgacttctaccagctt
ctggaagaaaaatgctgtgggaaactggagcacatcaattttcctgtgtttcagccaagc
acacctgacccggcacctgcaagggacgagtcctcgcctgcccctccggaaggcgagatt
gagaaactaaaagaaaaagaacctcagactcagggagaaagcacaggtctgagcttggcc
ctcagcctgggtcagtcaacgggcagcttgggcacttacccacctgacgcccagggtgga
ggggacaatgccgaaagtcacgggcagagtggggactccaaaagtgagaaaaggccgagc
ctggtagatcgtcaggcgtccactgtcgagtacctccctgggatgctccattctaattgc
cccaagggcctcttgcccaaattttccagttggtcactggtgaagctggggcctgctaag
gcttataacttccacacgggcctggaccaacaaggctttatcccgggaacaaactattta
atgccttgggacattgtcatcaggacaagaactgaagatgaaggagatctagataccaat
tcttggcctgcacctaacaaggccattcctgcaaagagaagcgcagttgtgatgggaaga
gggagaaggagagatgacatcgctcgagcgttcgtaggatttgaatatgaagatgcacgt
ggtaggaggttcatgtgttcagggcccgataaggtcatgaaagtgatgggcggggggcca
aaggaatccgccatcaaagccctcaattctgacatgccgctctacatcctgtcgtcgact
cagggacgagggctcaagccacattacgctcagttcatgagactctttgtggtggttccg
gatgctccactgcaaataacattgacgcctcaggttcagccagggccaccaccttgccct
gtattttaccctgagaaacaggaaataacccttccagctgatggactctgggtacttaga
tttccttatgcgtacgtgacagaacgtggaccctgcttccctccaaaagaaagccagcaa
ttaatgagttacaaagtccttcgaggaatactgaaagcaattacacagtaa
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