Oxyura jamaicensis (ruddy duck): 118176416
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Entry
118176416 CDS
T11549
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03030
DNA replication
oja03410
Base excision repair
oja03420
Nucleotide excision repair
oja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118176416 (RFC2)
03410 Base excision repair
118176416 (RFC2)
03420 Nucleotide excision repair
118176416 (RFC2)
03430 Mismatch repair
118176416 (RFC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oja03032
]
118176416 (RFC2)
03036 Chromosome and associated proteins [BR:
oja03036
]
118176416 (RFC2)
03400 DNA repair and recombination proteins [BR:
oja03400
]
118176416 (RFC2)
DNA replication proteins [BR:
oja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
118176416 (RFC2)
DNA Replication Termination Factors
ELG1-RFC complex
118176416 (RFC2)
Chromosome and associated proteins [BR:
oja03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
118176416 (RFC2)
DNA repair and recombination proteins [BR:
oja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
118176416 (RFC2)
Check point factors
HRAD17(Rad24)-RFC complex
118176416 (RFC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
nSTAND_NTPase5
AAA_lid_RFC1
AAA_14
RCF1-5-like_lid
AAA_16
Viral_helicase1
Mg_chelatase
AAA_11
Rad17
AAA_assoc_2
DNAX_ATPase_lid
AAA_19
nSTAND3
MipZ
RuvB_N
AAA_24
AAA_18
AAA_5
AAA_28
ABC_tran
AAA_25
AAA_23
AAA_30
NTPase_1
SLFN-g3_helicase
MeaB
FtsK_SpoIIIE
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
118176416
NCBI-ProteinID:
XP_035199298
LinkDB
All DBs
Position
19:join(3211163..3211269,3211822..3211891,3212521..3212562,3212961..3213067,3214058..3214159,3214723..3214823,3215501..3215658,3216028..3216093,3216585..3216665,3216998..3217111,3217809..3217919)
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AA seq
352 aa
AA seq
DB search
MEVEEAEKAGTQGEKRGPTDAPGPAPAAGGHYELPWVEKYRPMKLCEIVGNEDTVSRLEV
FAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKM
FAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQ
SRCAVLRYTKLTDSQILTRLLKIVEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSG
FGFINSENVFKVCDEPHPLLVKEMIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRV
CKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAAPAAS
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaggaggccgagaaggccgggacccagggcgagaaacgagggcccaccgac
gccccggggcccgctcccgcagccggcggccattacgagctgccctgggtggaaaaatac
agacccatgaaactatgtgaaatagtgggaaatgaagatacggtgagcaggttggaggtc
tttgcaaaagaggggaatgtaccaaatattatcattgctggtcccccaggaacaggtaaa
accaccagtatcctctgcttggctcgtgctctgcttggtcctgcattaaaggatgctgtt
ttggagctgaatgcctcaaatgacagaggcattgacgttgtgagaaacaaaatcaaaatg
tttgcccagcaaaaggtcacacttccaaaaggtcggcacaaaataatcatccttgatgaa
gcagacagcatgacagatggagcacagcaagcgttgagaagaacaatggaaatttattcc
aaaacaacacgcttcgcacttgcgtgcaatgcctctgacaaaatcatagaacctattcag
tctcggtgtgcagtgctgcgttacaccaagttgacggattcgcaaatccttacaaggcta
ctgaaaatagtcgagaaagaggatgtgccatatacagatgatggattggaagccattatc
ttcacagcccaaggagatatgagacaggcattaaacaacttacagtccacatattctgga
tttggctttataaacagtgaaaatgtgtttaaggtgtgtgacgagcctcatcctctgctt
gtgaaagaaatgatacagcactgcataaatgcaaatattgacgaagcatacaagattctt
gcccacctgtggagacttggatactctccagaagatgtgattggtaacatcttccgtgtg
tgcaaaacctttcaaatggccgaatatctgaaactggaatttatcaaggaaattggctac
acacatatgaaaatagcagaaggtgtgaactcgcttttacaaatggctggactgttggcc
aggctgtgtcagaagactgcagcccctgcagcaagttag
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