KEGG   Oxyura jamaicensis (ruddy duck): 118176943
Entry
118176943         CDS       T11549                                 
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03015  mRNA surveillance pathway
oja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    118176943 (PABPC1L)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    118176943 (PABPC1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oja03019]
    118176943 (PABPC1L)
   03041 Spliceosome [BR:oja03041]
    118176943 (PABPC1L)
Messenger RNA biogenesis [BR:oja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     118176943 (PABPC1L)
   mRNA cycle factors
    Stress granule specific factors
     118176943 (PABPC1L)
Spliceosome [BR:oja03041]
 Complex C
  Other components
   Complex C specific factors
    118176943 (PABPC1L)
SSDB
Motif
Pfam: RRM_1 MLLE RRM_10 RRM_occluded RRM_RdRP1_2 RRM_3 ATP-grasp_2 DUF6262
Other DBs
NCBI-GeneID: 118176943
NCBI-ProteinID: XP_035200137
LinkDB
Position
20:complement(join(5648840..5648923,5649719..5649849,5650237..5650330,5650636..5650772,5651272..5651397,5651677..5651767,5652292..5652558,5653174..5653269,5653722..5653859,5654135..5654229,5654983..5655122,5655827..5655942,5656350..5656543,5657270..5657462))
AA seq 633 aa
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKERD
AEFGARATEFTNVYIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSSGRSKGFGFVNFEK
HEEAQKAVADMNGKEINGRVVYVGRAQKRLERQSELKRKFEQIKQERVSRYQGVNLYVKN
LDDGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQPPPGYFLPPIPQPQTRATF
YSPSPVVPVRPATRWSAQPSRPPPYPSATPILRAAVQPRRLLSNISTMRQASTQVPRVSP
QAQRVANIGTQTVSARVPSSPTLPRGAPQYKYSPAVRNIQPLGSVPPGAPQVGEPAVHVQ
GQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESP
DSLHSKIEEAVAVLQAHQATETSHKGGAAAFLQ
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgaacgccagcggccccggctacccgttagcctctctgtacgtgggggacctccaccca
gacgtgaccgaagccatgctctacgagaagttctcgcccgccgggcccatcatgtccatc
cgagtctgccgggacgttgccacgcgccgatcgctgggctatgcctacataaacttccag
cagccggcggatgctgagcgagccctggacaccatgaatttcgaggtgatcaaaggccgg
cccatccgaatcatgtggtcccagcgagaccccgggctcaggaagtcaggggtcggaaat
gtatttatcaagaacctggatgactccattgataacaaagccctgtacgacacgttctcg
gcctttgggaacatcctgtcctgcaaggtggtctgtgatgaaaacggatcccgtggctat
ggctttgttcactttgagactcaggaggcagcaactcgggccatcgagaccatgaacggg
atgctgctcaacgaccgcaaggtgtttgttggccacttcaaatcccgcaaagagcgcgac
gcagagtttggggctagggcgacggagttcaccaacgtctacatcaagaacttcggggat
gacatggatgatgacagactgcgggaaatattctccaagtttggaaagactctgagcgtc
aaagtcatgatggacagctccggccgctcgaagggctttgggtttgtgaactttgagaag
cacgaagaagcccagaaggccgtggccgacatgaacggcaaggagatcaacgggcgggtg
gtgtacgtgggccgggcacagaagcggctggagcggcagagcgagctgaaacggaaattt
gagcagatcaagcaggagcgagtgagcaggtaccagggggtcaacctgtacgtgaagaac
ctggacgatgggatagacgacgagcggctgaggaaggagttctctccctacggcaccatc
accagtgcaaaggtgatgacagagggtggccacagcaaagggtttggctttgtatgtttt
tcctctccagaagaggctaccaaggccgtgaccgaaatgaacgggcggatcgtcagcact
aagcctctctacgttgccctcgcacaaaggaaagaggagcggaaagcaattctcaccaac
cagtacatgcagcgattagctaccatgagggccctgcccggccctctccttggctccttc
cagccccccccggggtacttcctaccccccatccctcagccacaaaccagagctactttc
tacagccccagcccagttgtccccgtccgccccgccactcgctggagtgcgcagccctcc
cggcctcccccgtatccttcagccacccccatcctgagagctgccgtgcagccccggcgc
ctgctgtccaacatcagcaccatgagacaggcgtccacccaagtgcctcgcgtgtccccc
caggcccagagagtggccaacatagggacgcagacggtcagtgcccgggtgccctcctcg
cccaccctgccgcggggcgccccgcagtacaagtactcgccggccgtgaggaacatccag
ccgctgggcagcgtgcctcccggggccccgcaggtgggagaacccgctgtgcacgtccag
gggcaggagccgctgacagcatccatgcttgcagcagcccctcctcaggagcagaagcag
atgataggtgagcgcctctacccgctgatccacgcgatgcacgcctcgctggctggcaag
atcacggggatgctgctggagatcgacaactcggagctgctgctcctcctggagtccccc
gactccctgcactccaagatcgaggaagctgtggctgttctccaggcgcaccaggccact
gagacatcgcacaagggcggcgcggcggcgttcctgcagtga

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