Oxyura jamaicensis (ruddy duck): 118176978
Help
Entry
118176978 CDS
T11549
Symbol
SS18L1
Name
(RefSeq) calcium-responsive transactivator
KO
K15623
protein SSXT
Organism
oja Oxyura jamaicensis (ruddy duck)
Pathway
oja03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oja00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118176978 (SS18L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oja03036
]
118176978 (SS18L1)
Chromosome and associated proteins [BR:
oja03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118176978 (SS18L1)
GBAF(ncBAF) complex
118176978 (SS18L1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
118176978
NCBI-ProteinID:
XP_035200196
LinkDB
All DBs
Position
20:join(12372721..12372789,12376229..12376305,12377789..12377873,12378701..12378845,12381306..12381503,12382469..12382633,12383531..12383632,12383981..12384073,12385343..12385462,12386543..12386670,12386882..12386908)
Genome browser
AA seq
402 aa
AA seq
DB search
MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVY
LATIADSNQNMQSLLPAPPTQNINLGPGGMTQSASNQSLHSQSNLSDAIGTGLPPSSLMQ
SQISNGPNHVSMQQSGQNTMPTTSLSMTVSSHGTGPGYSHTVPASQNVPMQGQGSIGNYV
SRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQSSIAMMSQSNQGNSMMGQRPMGP
YRASQQGSSQQYMGQEEYYSEQYSHGQGSSEPMNQQYYPDGHGDYAYQQSSYTEQSYDRS
FDDSTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPNQQSYPGQQQGYGPAQGASSQ
YSSYQQGQGQQYGSYRASQTGPSAQQQRPYGYEQGQYGNYQQ
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtcgcctttgcttctgctcgcccgaggggcaaaggggaggtcacccagcaaact
atccagaagatgctagatgaaaaccaccacctaatacaatgtattatggattaccagagc
aaggggaaaactgcagaatgtactcaataccaacaaatcttgcacagaaacctcgtttac
ttggcaacaatagcagattctaaccagaatatgcagtccttgcttcctgctcctccaacg
caaaacataaacttgggcccaggaggaatgactcagagtgcatccaaccaatctctccat
tcacagagcaatctcagtgatgcaattgggacgggccttcctccttcctccctcatgcag
agtcagattagcaatggtcctaatcacgtgtctatgcagcagtcaggccagaacactatg
cccacaacctctctgagtatgactgtcagcagtcatggaactgggcctggttatagccat
acagtgcctgcatctcagaatgtgccaatgcaaggccaggggtcaataggcaattatgtc
tctcgaacaaacatcaacatgcagtctaatccagtctccatgatgcaccagcaagcagca
acgtcacattacaactcggcacaaggagggagccaacactaccagggccagtcttccatt
gccatgatgagtcagagcaaccagggcaacagtatgatggggcagcgaccgatgggcccc
tacagagcttcacagcaaggttcctcacagcagtacatgggtcaggaagaatattacagt
gaacagtacagtcatggacaaggctcatcagaacctatgaatcagcaatactatccagac
ggacatggtgattatgcctatcagcagtcatcctatacagagcagagctatgacagatca
ttcgatgactctacacaacactattatgaaggaggaaattctcagtacagccagcagcag
gcaggataccaacagggagctgcacaacagcaaacgtattcccagcagcaatacccgaat
caacagagttacccaggacaacagcaaggatatggtcctgcgcaaggagcatcttcacag
tattcaagctaccaacagggacaggggcagcaatatggaagttacagagcttctcagaca
ggaccatccgctcagcaacagaggccttatggctatgagcagggacaatatggaaattat
cagcaataa
DBGET
integrated database retrieval system
