KEGG   Oxyura jamaicensis (ruddy duck): 118177245
Entry
118177245         CDS       T11549                                 
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
  KO
K14435  chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oja03036]
    118177245 (CHD5)
Chromosome and associated proteins [BR:oja03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    118177245 (CHD5)
SSDB
Motif
Pfam: SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT PHD DUF1087 Chromo PHD-1st_NSD ResIII HDA2-3 PHDvar_NSD HTH_CHD1_Hrp3 DEAD PHD_2 AAA_22
Other DBs
NCBI-GeneID: 118177245
NCBI-ProteinID: XP_035200682
LinkDB
Position
21:join(716552..716615,718228..718358,722106..722285,723397..723515,724055..724293,725243..725367,727413..727536,729355..729521,730261..730479,731500..731706,731792..732003,734326..734457,735034..735142,735687..735878,735967..736167,736578..736715,737438..737559,738023..738196,738758..738899,739094..739225,739779..739896,740409..740533,741503..741734,741825..741950,742063..742235,742980..743154,743614..743706,744214..744302,744470..744603,744801..744945,746592..746751,746900..746979,747468..747597,748294..748383,748775..748915,749116..749224,749427..749559,750035..750230,750361..750524,750709..750823,750940..750947)
AA seq 1954 aa
MRGPAAGEELPEEADNDEDVSEEDDGVLEGLDEFFPEEQVAVQKKKKSKKLKDSKAAKIK
RRKKEGSNDEISDNEEEMEEKSESEGSDYSPNKKKKKKLKEKKEKKTKRKKKDEEDDDNE
DGGLKEPKSSAQLMEEWGLDDVDYIFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKM
MTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTVAPPLAASPQQSALPAVIRKAKT
KEGKGPGVRKKIKGSKDGKKKGKGKKMAGLKFRFGGIPSKRKKGSSSEEEEREESDFDSA
SINSSSVRSECSAGLGKRGKRRRKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRA
YHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKEDDDEEEEGGEEEEDDHMEFCRVCKDG
GELLCCDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWTWKEPPAPLP
STLPAPDAELPLPLPKVLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRK
NDMDEPPAFDYGSGDEDSQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFDKK
GDIHYLIKWKDLPYDQCTWEIDEIDIPYYENLKLLYWNHRELMLGEDTRPLKKLNKKGKK
LKEEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILAD
EMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKE
SRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLV
VDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL
EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILT
RNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGK
LMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDR
FNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMI
YRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDV
EGMVSQGQRIAMPDAVTPFSDTLSTKGGAVTPGMKKKHGGTPPGDNKDVDDSSVIHYDDA
AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYW
EKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDED
EDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWG
MPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHV
LTRIGVMSLVRKKVQEFEHVNGKYSTPDLILEGPESKKSSEIVSSDPNTPVPASPAHMHT
GPLTLAEKTETQLGFQEEKEQVEQKPKKVSDSQVPVGAEKVESEEHQESCESKEKLKEEK
QEEGEKAEPSPEPLVKDEGIQEKEKPLEKPEFNSNPGKGEDKEVKPAEDTKVEEKEQSET
QQNGDKEEEEDGKKDYRNVNFRFMFNIADGGFTELHTLWQNEERAAISSGKIYDIWHRRH
DYWLLAGIVTHGYARWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQAL
VIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKV
LNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTTRGGEPPVQQGSFGSS
QIYNNNFGPNFRGPGPGGIVNYSQMPLGPYVTDI
NT seq 5865 nt   +upstreamnt  +downstreamnt
atgcgggggccggcggcgggcgaggagctgccggaggaggcggacaacgacgaggacgtc
tcggaagaagatgatggggtcctggaaggactggatgagtttttcccagaagagcaagtt
gctgtgcagaaaaaaaagaaatccaagaagctgaaagacagcaaggctgccaaaatcaag
aggaggaagaaagaggggagcaacgatgaaatatcagacaatgaagaggagatggaggag
aaatctgagagtgaaggaagtgactattcccccaacaaaaagaaaaagaaaaaactgaag
gaaaagaaggagaaaaaaacaaaaaggaaaaagaaagacgaagaggatgatgacaacgag
gacggaggtctgaaggagcccaagagctcagcccagctgatggaggaatggggccttgat
gatgtagattacattttctcagaagaagattaccatactctgactaattacaaggctttc
agccagtttctcaggcctctgatcgccaagaagaaccccaagatccccatgtccaagatg
atgactgtgcttggtgccaagtggcgagagttcagcgccaacaacccgttcaagggcagc
tcagcggctgcagccgcggcagccgttgctgcagcagtggagaccgtcactgttgctcca
ccgctggctgccagccctcagcagtctgccttgcctgctgtcatcaggaaagctaaaacc
aaggagggaaagggtccaggtgtgcggaagaagatcaagggctccaaagatgggaagaaa
aaggggaaggggaaaaagatggcaggcttgaaattccggtttggaggaatccccagcaaa
aggaaaaagggctcctctagtgaagaggaagaacgggaggaatccgactttgacagtgcc
agcatcaacagctcctcagtgcgctctgagtgctcggctggcctggggaagagagggaag
aggaggagaaagaaaaagaggattgaagaaggggatggatatgagacagaccaccaggac
tactgtgaggtgtgccagcagggaggggagatcatcctgtgcgacacctgtccccgtgcc
taccacctcgtctgcctggaccccgagctggagaaggcccccgagggcaagtggagctgc
ccccactgtgagaaggaggggatccagtgggagccaaaggaggatgacgatgaggaagag
gaaggtggtgaagaagaggaggatgaccacatggagttctgccgtgtctgtaaggatgga
ggggagctgctgtgctgcgacacgtgcccatcttcctaccacctgcactgcctgaacccg
cccctgccggagataccaaacggtgaatggctctgccctcgctgtacatgccctccttta
aagggcaaagtgcaacgcatcctgcactggacctggaaggagccaccggccccgcttccg
tccacgctgccggccccagatgcggagctgcctctcccgctgccaaaggtgctggagggc
atcccggagcgggagttcttcgtcaagtgggcagggctctcctactggcactgctcctgg
gtcaaggagctgcagctggagctctaccacacggtgatgtaccgcaactaccaaaggaag
aacgacatggatgagccgccggccttcgactatggctctggggacgaggacagccagagg
gagaagcggaagaacaaggacccgcagtatgccaagatggaggagcggttctaccgctac
ggcatcaagcccgagtggatgatgatccaccgcatcctgaaccacagctttgataaaaag
ggagacattcattacctgatcaagtggaaagatctgccgtatgaccagtgcacctgggag
attgatgagatagacattccttactatgaaaacctcaagctcctctactggaatcacagg
gagctgatgctgggggaagacacacgccctctaaagaagctgaacaagaaagggaaaaag
ctgaaggaggagaagctagaaaagcctccagaaactcctcttgttgatcctacagttaaa
tttgacaaacagccatggtacattgatgctacgggaggcacgctccatccttaccagctg
gaagggctcaactggctgagattttcctgggcccaagggactgatacaatcctggctgat
gagatggggctggggaagacagtgcagaccatcgtgttcttgtattccctgtacaaggag
ggccactcgaaagggccgtacctggtcagtgccccgctctccaccatcatcaactgggag
cgtgagtttgagatgtgggcgcctgacttctacgtcgtgacctacacaggggacaaagaa
agccggtcggtcatccgggaaaatgagttctctttcgaagacaatgccatccgcagtgga
aagaaggtcttccggatgaagaaggaagcccaaatcaagttccatgtcctgctcacctcc
tacgagctgatcaccattgaccaggcggtgctgggctcgatagagtgggcctgtctggtg
gtggatgaagcacacaggctgaagaacaaccagtccaaattctttagagtattaaatagc
tacaagattgattacaagctgctgctcaccgggactccactccagaacaacttggaagag
ctcttccacttgctcaatttcctgactcctgagaggtttaataacctggaagggttcttg
gaggagtttgcagacatctccaaggaggaccagatcaaaaagctccatgacctgctgggt
ccccacatgctgcggcggctcaaggcggatgtgttcaagaacatgccggccaagacggag
ctgatagtgagagtggagctgagccaaatgcagaagaagtactacaagttcatactgaca
aggaattttgaagccctgaattcaaaaggtggagggaaccaggtctcactgctcaacatc
atgatggatctgaagaagtgctgtaatcacccgtacctcttccctgtggctgctgtggag
gctccggttctgcccaatggatcttatgatgggaattctttggttaaatcttctgggaaa
ctgatgctgctccaaaagatgctgaagaagttgcgggatgggggtcacagagttctgatc
ttctcccagatgacgaagatgctggacttgctggaggacttcctggagtacgaaggctac
aagtacgagcggatagatgggggcatcaccggaggcttgcgccaggaagccatagacagg
tttaatgctcctggtgctcagcagttctgctttctcctctctacccgcgccggtggtctg
ggcataaaccttgctacagccgacacggtcattatttatgattctgactggaatccccac
aatgacatccaggcgttcagcagagctcaccgcatcgggcagaacaagaaggtgatgatc
taccgctttgtgacaagagcatccgtggaagagcgtatcacccaggtggccaaaaggaag
atgatgctcacccacttggttgtccgtcctgggcttggctcaaagtcaggctccatgacc
aagcaggagctggatgacatcctcaagttcgggacagaagagctcttcaaggatgatgtg
gaaggcatggtgtctcagggacagcggatcgccatgccggatgctgtcacccctttctct
gacactctgtcaaccaaagggggtgcggtgactcctggcatgaaaaaaaagcatggtggc
acccctccaggtgacaataaggatgtggatgacagcagtgtgatccactatgacgatgct
gctatctctaagcttctcgaccgaaaccaggatgcaactgatgacactgagttgcagaac
atgaacgagtatctgagctcctttaaagtggcccagtatgttgtgagagaagaggatggt
gtggaggaggtggaacgtgagatcatcaagcaagaggagaatgtggaccctgactactgg
gagaagctactgcggcaccactatgagcagcagcaggaagatctggccaggaacctgggg
aaagggaagagaatccgcaagcaggtcaattacaacgatgcctcgcaggaggaccaagag
tggcaggacgagctctctgacaaccagtctgagtactccattggctccgaggatgaggat
gaagactttgaagaaagaccagaaggtcagagtggcaggagacaatcacgaagacagctg
aagagtgaccgagacaaacctctccctcctttgctggcaagagttggggggaatattgag
gttctcgggttcaatgcccgtcagcgcaaggctttcctgaacgctatcatgcggtggggc
atgccgccccaggatgccttcaactctcactggctggtccgggatctgcgagggaagagc
gagaaagagttcagggcgtacgtctctctgttcatgagacatttatgtgaacctggagca
gatggtgctgaaacctttgcagatggcgttccccgggaagggctttcacggcagcacgtg
ctgactcggataggagttatgtcactagtaaggaagaaggtccaggagtttgagcatgtc
aacgggaagtacagcaccccagatctgattcttgaaggcccagagagcaagaagtccagt
gagattgtttcttcagatcccaacacccccgtcccggccagcccagcgcatatgcacaca
ggacctcttacccttgcagaaaaaacagaaacacaacttggattccaagaggaaaaggaa
caagtggagcagaaacccaagaaggtgtctgacagccaggtgcctgtaggtgctgagaag
gtggaaagtgaagagcaccaggaaagctgtgaaagcaaagagaaactgaaggaagagaaa
caagaggagggtgaaaaggctgagccttctcccgaacctttagtgaaagatgagggaatt
caagaaaaagagaagcctttggaaaagccagagttcaacagtaatcctggtaaaggggag
gacaaagaagtcaaaccagcagaggataccaaggtggaagagaaggagcaaagcgagact
cagcaaaacggtgacaaagaagaagaggaggatggaaagaaggattacagaaatgtgaac
ttcagattcatgttcaacatcgctgatggtggctttacagagttgcacacgctgtggcag
aatgaggaaagagctgccatctcctccggcaagatctatgacatctggcaccgcagacac
gactactggctgttggcaggaattgtcactcacggctatgcccgctggcaggacatccag
aatgacccacgctacgtgattctgaacgagcccttcaagtcggagatacacaaggggaac
tacctcgagatgaagaacaagttccttgcccggcggttcaagttgctggagcaggccttg
gtgatagaggagcagcttcgaagggctgcgtacctcaacatgactcaagaccccaatcac
ccggccatggcactgaacgcccgtctggctgaagtggagtgccttgctgagagccaccag
catctctccaaagagtcccttgctgggaacaagcctgcaaatgctgtcctgcacaaggtg
ctgaaccagctcgaggagctgctgagcgacatgaaggccgatgtgacgcgcctgccctcc
atgctgtcccgcatcccgcccgtggccgcgcggctgcagatgtcagagcgcagcatcctg
agccgcctcaccacccgcgggggtgagcccccggtccagcagggctcctttggttcctcc
cagatctacaacaacaactttgggccgaatttccgaggtcctgggcctggtgggattgtt
aactacagtcagatgcctctgggaccgtatgtgaccgatatttag

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