KEGG   Oxyura jamaicensis (ruddy duck): 118177249
Entry
118177249         CDS       T11549                                 
Symbol
NPHP4
Name
(RefSeq) nephrocystin-4
  KO
K16478  nephrocystin-4
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:oja03037]
    118177249 (NPHP4)
Cilium and associated proteins [BR:oja03037]
 Primary cilia and associated proteins
  Nephronophthisis-related proteins
   118177249 (NPHP4)
SSDB
Motif
Pfam: NPHP4_C2_3rd NPHP4_C2_2nd Ig_NPHP4_1st Ig_NPHP4_4th Ig_NPHP4_2nd Ig_NPH4_3rd NPHP4_SK
Other DBs
NCBI-GeneID: 118177249
NCBI-ProteinID: XP_035200703
LinkDB
Position
21:join(783251..783421,784536..784688,786522..786694,787005..787069,788416..788571,790317..790453,791086..791243,791331..791457,794972..795154,796067..796196,799386..799432,800495..800614,800657..800796,800939..801130,801781..801968,803298..803458,804063..804243,806373..806501,806628..806827,806900..807126,807332..807521,807826..807906,808011..808167,808588..808673,809808..809893,810328..810499,811955..812134,813615..813758,814047..814187)
AA seq 1424 aa
MPRGRGDLLSIKMSEWERIFLQNLTVPPHSQRRRNIPKESTAFQCVLKYVEGTVVTQQAA
GGSVAVEFQLRLSLFDAAYHHFFGRTWRSSARTPRSAPQQRPRVVFNEAVYFHTSLNHPS
ITAVVEVVVTAQTLEGLSQDLSCGFGLIPLFDSRWDPTDLAAKDRVLKLYHGTPRALLHP
LFQDPVEKNKYMTIMENSHLQYTLKPHPPLETIFHLLPENLLVSGLQKIPGLLPAHGDTS
DCFLKPRLMKSVTCYLDKLSIRLYPSLEKFEEELLELLNSDRLLKVSARPAGSALSVQER
RLRVGVHNGLRFVQAPQVAVLLPAAEVARGRPDGPPASAAGQALLLRSRLQLSEMVPHPA
FGVCFQLEYVVCATAGASSKAEAGSALGPAADMHAVRWALWSPFLGTDSSPVVLPLRGGS
CRSPGQALVFRAPADSESSEEVKQVASGTVQFHVSTDSEENLATSTDTSSKARKESEKPP
TPSLSPPSALCLVASPRGPGLSLSELSASPCSKGEPPLPQSSGAPVPWPRGTSRDTRTLR
VAGITHLEADLRPGDPDPDPSSSEQLRELPFTPAQMPIAAVGLPAGSSSTVLSRASLALL
HASGFPEILDCNKEPVEVAEPLDFTSFSPQLEEADALQSNEIILQFLAFSRAPQDGVEGT
WPRTVFLTFQFYHFPPVTTPRLQLVDIDREKAARAAVPPQVLVQINKDGTPRTGAPGLQL
KYMVDPAFLKPGEQRWFVRYLADHSLQIDVWDGDSLLFVGSAAVKLKPLLRQGRPAVRTL
HELEVVTTEYEQDAVAAGRDALWHGVVRPVDVRVAVRGRLHLCLANVGHPCEETLRIPRH
PSPLRAHLVSSLDSISSLQGGSLLSPHAGSGPRVSRARRLAEVDGELSAMLCSHWPEVNP
ASPHAPREAADVRQRKLRRMALVRQQEDAGGSTPQCMGQHEQRMQHLRDLQVIDAYREHT
KSESITQMLSQAITTTHTVYAVLGTAEFFEFALKNPYSVQHTVTIEVDHPELSVILDPRE
WRHFKELTKVATPLEEDMFHLRDDLRPQVYLRPKETVHIPFRYQTFSAEPAVAVVPGLAG
LSTGDDATTTSWQSGAMQTKHIQVAFRVSGGKPIALLRVKVEPRPHVVDQTFRFYHPELT
FLKKAIRLPPWHTLPGAPAGMPGGEPEMYVRCSDPNIICETKNMGPGEPQDVFLKVAGGP
SPQIKKFFVAIYTDAWLAVPLRIWQFYLHSLQRLDVSCTAGQLARLVLPLRGTRALRKVK
AFSSHPHELKVDPEGVFVLPPNGVLDLYVGVRPRRAGSRFIYLNLVDVEYHQLVSSWLVC
VSCRQPLISKAFEITLPAGGGRGSNKRITYTNPYPTRRVYFLGTSRPDLLQFKEDSFEVA
GGEVYTIGLRFAPSQSTGEEEILIHINDHEDKNEETFCVKVVYQ
NT seq 4275 nt   +upstreamnt  +downstreamnt
atgcctagaggaagaggtgaccttctgagcatcaagatgagcgagtgggaaaggattttt
ctgcaaaacctcactgttcctccccactcccagcggaggcggaatatcccgaaggagtca
acggcttttcagtgtgtcctgaagtatgtcgaggggactgtcgttacacagcaagcggcg
ggcggctcggtggccgtggagttccagctgcgcctgtccctgttcgatgccgcctatcac
cacttcttcggccggacgtggcggagcagtgccaggaccccccgcagcgccccgcagcag
cgcccaagggtggtgttcaatgaggccgtttacttccacacctcactgaaccaccccagc
atcacggctgtggtagaggtggtggtgacagcccagacgctggaggggctctcccaggat
ctgtcgtgtggctttgggctcatccccctgttcgacagcaggtgggatcccacggacctg
gctgccaaggacagagtactcaagctgtaccatgggacaccacgtgccttactgcatcca
cttttccaggaccctgtagaaaagaacaaatacatgacgataatggagaacagccacctg
cagtacaccctgaagccccacccacccctggagacgatatttcacctcctgcctgaaaat
cttctggtgtctgggctgcagaaaatccctggcttgctccctgcgcacggagacaccagt
gactgctttctgaaaccacggctcatgaagtcggtcacctgctacctggacaagctctcc
atcaggctgtacccttctctggagaaattcgaggaggagctgctggagttactgaacagt
gaccgcttgcttaaggtgagcgcccggcccgctggcagcgcgctgtcggtgcaggagcgg
cggctgcgtgtcggcgtccacaacggcctgcgcttcgtccaggcgccgcaggtggccgtg
ctgctgccagcagcagaggtggcccgtggacggcctgacggccccccagccagtgcagcg
ggccaggccctgcttctgaggagccgcctgcagctgagcgagatggttcctcaccccgcc
tttggggtctgcttccagctggagtatgtcgtctgcgccacggccggagccagcagcaag
gccgaggccggcagcgccctgggcccggcagctgacatgcacgcagtgcggtgggcgctc
tggagccccttcctgggcactgactcctccccagtggtgttgcccctgcgcggtggttcc
tgccgcagccctggccaggccttggtcttcagggcccctgccgacagcgagagctccgag
gaggtgaagcaagttgcatctggtactgtccaattccatgtttccactgattcagaagaa
aatcttgcaacttctacagatacctcaagtaaagccaggaaagagtcagagaagcctcct
acaccatctctgagtccgccctctgcgctgtgcctggtggcctctccgcggggaccaggg
ttgtcactctctgagctctcggcctcaccatgcagtaagggcgagccccctctgccacag
agcagcggtgccccggttccctggccccgtgggacatcacgggacacccgcacgctcaga
gtggctgggatcacacacctggaggccgacctgcgccccggcgacccagacccggacccc
tccagcagcgagcagctgcgggagctgcccttcacgcctgcccagatgcccattgcagct
gtggggctgccagcaggcagttccagcaccgtgctctctcgtgcctccctggcactcctg
catgcctctggatttccagaaatcctagactgcaacaaggagcctgtggaggttgcagag
cccctggacttcacgagcttcagtcctcagctggaggaagctgatgctctgcagagcaat
gaaataatcctgcaattccttgctttcagtagggctcctcaggatggagtggaagggacg
tggcccaggactgtgttcctcaccttccagttctaccatttcccaccagttaccacacca
cgtctgcagctggttgacatagacagagagaaggcagccagggcagccgtaccgcctcag
gtccttgtccagatcaacaaagatgggactccacgcactggagctccgggactgcagctg
aagtacatggtggatcctgctttcctgaaacctggggaacagcgctggtttgtgcgctac
ctggctgaccacagccttcagattgacgtctgggatggagactctttgctttttgttggg
tccgctgcggttaaattgaagcccctgctgcgccagggccgcccggctgtcaggaccctc
cacgagctggaggtggtaaccacggagtacgagcaggatgcggtggcagcaggcagggac
gcactgtggcatggagtggtgcggcctgtggacgtccgtgtggcagtgaggggccgcctt
cacctctgcctggccaacgtgggccacccctgtgaggagaccctgaggatcccaaggcac
ccatcgccattgcgtgcccacctcgtgtcctcgctggacagcatcagtagcctgcagggt
ggcagcttgctctccccgcatgctggcagcggtccaagggtgtcacgggcacgcaggctg
gctgaggtggatggtgagctgtcagccatgctttgtagtcactggccagaggtgaaccca
gcctccccgcatgccccccgtgaggctgcagatgtccggcagcgcaagctgcggcgcatg
gccctggtgcggcagcaggaggatgctggtgggagcacacctcagtgcatgggccagcac
gagcagcgcatgcagcacttgcgggatctgcaggtgatcgatgcctaccgggagcacacc
aagagcgagagcatcacccagatgctcagccaggccatcaccaccacccacactgtctat
gctgtgctggggacggctgagttctttgagtttgctctgaagaacccctacagcgtccag
cacacagtgacgatagaggttgaccaccctgagctcagtgtcatactggacccgagggag
tggcggcacttcaaggagctgactaaggtggctacaccactggaggaggacatgttccat
cttcgtgatgaccttaggccccaggtctacctgcgtcccaaggagactgtccacatcccg
ttcagataccagacgttctcggcagagccagctgtcgcagtggtgccggggctggcaggg
ctgagcacaggggacgatgcaaccaccacctcctggcagtctggggccatgcagacgaag
cacatccaggtcgctttccgcgtgagtggggggaagcccatcgcgctgctgcgggtgaag
gtggaaccccgtccccacgtggtggaccagaccttcaggttctaccaccccgagctcacc
ttcctgaagaaggccatccggctgccgccctggcacacgctgccaggcgctccggcaggg
atgccgggtggggagccggagatgtatgttcgctgcagtgaccctaacataatttgtgaa
accaaaaatatgggtcctggggaaccacaggatgtcttcttaaaagtagctggaggacca
agcccacagatcaaaaaattctttgttgctatttatacggacgcctggctggccgtgccg
ttgcgcatctggcagttctacctgcattccctgcagcgcctggacgtcagctgcaccgcc
gggcagcttgcccgcctcgtcctgccgctgcgcggcacgcgggccctccggaaggtgaag
gcgttctcctcgcatccccacgagctgaaggtggatccagaaggcgtgtttgttctgccc
ccaaatggtgtcctggacctgtatgttggtgtgaggcctcggagggctggcagcaggttc
atctacctcaatctggtggacgtggagtaccaccagctggtgtcctcctggctggtctgt
gtctcctgcaggcagcctctcatttctaaggcgtttgagataacgctccccgcaggtggc
gggaggggctccaacaagcgcatcacctacaccaacccctaccccactcggagggtgtac
ttcctgggcaccagccgccccgacctgctgcagttcaaggaggactcctttgaggttgct
ggcggggaggtgtacaccatcggcttgcggtttgccccgagccagagcacaggtgaggag
gagatcctgatccacatcaacgaccacgaagacaagaacgaggaaaccttctgtgtgaag
gttgtgtaccagtga

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