KEGG   Oxyura jamaicensis (ruddy duck): 118177636
Entry
118177636         CDS       T11549                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03082  ATP-dependent chromatin remodeling
oja03083  Polycomb repressive complex
oja04110  Cell cycle
oja04330  Notch signaling pathway
oja04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    118177636 (HDAC1)
   03083 Polycomb repressive complex
    118177636 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    118177636 (HDAC1)
   04350 TGF-beta signaling pathway
    118177636 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    118177636 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oja03036]
    118177636 (HDAC1)
Enzymes [BR:oja01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     118177636 (HDAC1)
Chromosome and associated proteins [BR:oja03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     118177636 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     118177636 (HDAC1)
    BRAF-HDAC complex
     118177636 (HDAC1)
    REST complex
     118177636 (HDAC1)
    SHIP complex
     118177636 (HDAC1)
    MiDAC complex
     118177636 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     118177636 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    118177636 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    118177636 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl RNA_polI_A34
Other DBs
NCBI-GeneID: 118177636
NCBI-ProteinID: XP_035201414
LinkDB
Position
23:complement(join(5841857..5841884,5842261..5842309,5842417..5842563,5843336..5843466,5843572..5843680,5844171..5844311,5844489..5844597,5844885..5844977,5845785..5845926,5846519..5846657,5847756..5847830,5850465..5850582,5851054..5851128))
AA seq 451 aa
MKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSK
QMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASG
FCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTG
DLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGD
RLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELP
YNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAV
QEDSGDEEEEDPEKRISIRNSDKRISCDEEFSDSEDEGEGGRKNVANFKKAKRVKTEEEK
EEEEKKEEKEEEKTKEEKPEPKGVKEETKST
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgaagccccacaggatccggatgacccacaacctgctgctcaactatggtctctacagg
aagatggagatctatcgccctcacaaggcaaacgcagaagaaatgaccaagtaccacagc
gatgactacatcaagttcctgaggtctatccgcccggataacatgtctgagtacagcaag
cagatgcaaagattcaacgttggggaagactgccctgtgtttgatgggttatttgagttt
tgtcagctctctgctggaggctcagttgccagtgctgtgaagctgaacaagcagcagaca
gatatcgctgtgaattgggcaggaggccttcaccacgcgaagaagtcggaggcttctggc
ttctgttacgtcaatgatattgtcctggccatcttggagctcctaaagtatcaccagaga
gtgctgtacattgacattgatattcaccatggggatggcgtggaggaagccttttatacc
acagaccgtgtgatgaccgtgtcctttcataagtacggagaatacttcccgggaacagga
gacctacgggacattggtgcaggcaaaggcaagtactatgctgtcaactaccccctccgt
gatggaatcgatgatgagtcctatgaggcgatattcaagccggtgatatctaaagtgatg
gagacgttccagcctagcgcagttgtcttgcagtgcgggtcggattctctgtcaggggac
aggctgggttgtttcaatctgaccatcaaaggtcatgccaagtgtgtggagtttgtaaaa
agttttaatttgcctatgctgatgctgggaggaggtggctatacgatccgcaacgtggct
agatgctggacctacgaaactgctgtggctttggacactgaaatcccaaatgaacttcca
tataatgactattttgagtactttggaccagactttaagctgcacatcagtccctccaac
atgactaaccagaacaccaacgagtatctcgagaagatcaagcaacgtctctttgagaat
ctgcgcatgctgcctcatgcccctggtgtccagatgcagccaattcccgaagatgctgtt
caggaagacagtggagatgaagaggaagaagatcctgagaaacgcatttcgatccgcaat
tctgataagagaatatcgtgcgatgaagaattctctgactctgaagatgaaggggaagga
gggcgcaaaaacgttgccaactttaagaaagcaaaacgtgtgaaaacagaagaggaaaag
gaggaagaggagaagaaagaggaaaaagaagaggaaaaaacaaaagaggagaaaccagaa
cccaaaggggtgaaggaagagacgaaatctacctaa

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