KEGG   Oxyura jamaicensis (ruddy duck): 118178222
Entry
118178222         CDS       T11549                                 
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oja04131]
    118178222 (COPA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oja04147]
    118178222 (COPA)
Membrane trafficking [BR:oja04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    118178222 (COPA)
Exosome [BR:oja04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   118178222 (COPA)
  Exosomal proteins of bladder cancer cells
   118178222 (COPA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st WD40_Gbeta EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_RFWD3 WD40_MABP1-WDR62_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 118178222
NCBI-ProteinID: XP_035202456
LinkDB
Position
25:join(1698573..1698612,1699069..1699182,1699592..1699665,1699937..1700017,1700301..1700377,1700866..1700975,1704906..1705015,1705531..1705630,1706200..1706335,1706762..1706844,1706944..1707094,1707409..1707475,1707581..1707656,1709726..1709808,1710787..1710926,1711832..1711917,1712328..1712466,1712802..1712964,1713070..1713216,1713508..1713697,1713809..1713904,1714286..1714374,1714606..1714729,1715025..1715114,1715199..1715308,1715511..1715588,1715795..1715863,1716084..1716220,1716782..1716968,1717056..1717166,1717387..1717548,1717649..1717843,1718144..1718203)
AA seq 1224 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDRLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVAERVRILKNCGQKSLAYLTAATHGLDEEAENLKETFDP
EKETIPDIDPNAKLLQPPAPVMPLDTNWPLLTVSKGFFEGTIASKGKGGALAADIDIDNV
GTEGWGEDAELQLDEDGFVDAGEGFGEEGLGKGQEEGGGWEVEEDLDLPPELDVPAGPAG
GAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLFL
QTYARGRTTYQALPCLPTMYGYPHRNWKEAGLKNALPAVGLKLNDLIQRLQLCYQLTTAG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIAICREYIVGLSMEIERKKLPKETLEH
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYCPEFQGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgctgaccaagttcgagaccaaatcggcccgggtgaaagggctcagcttccacccgaag
cggccctggatcctcaccagcctgcacaacggcgtcatccagctgtgggactatcggatg
tgcaccctcatcgacaagttcgacgagcacgacggacccgttcgagggattgatttccac
aaacagcagcctctgtttgtttctggaggggatgactacaaaatcaaggtgtggaattac
aaactgcgccgctgccttttcaccctgctcgggcacctggattacatccgcaccaccttc
ttccaccacgaatatccctggattttgagtgcttctgatgatcagaccattcgggtttgg
aactggcagtccagaacttgtgtctgtgtgctgacaggacacaaccactatgtgatgtgt
gcccagtttcacccctctgaggacctggtagtgtcagccagcttggatcagactgtgcgc
gtttgggatatttctggcctaaggaagaagaacctgtcccctggagctgtggaatcggat
gtccggggaataacaggggtggacttgtttgggacaacagatgcggttgtgaagcacgtt
cttgagggccacgatcgtggggtgaactgggctgccttccatcccaccatgccgcttatt
gtgtcaggagctgatgatcggcaagtgaagatctggcggatgaatgaatccaaggcctgg
gaggttgacacttgccgaggacattacaacaatgtctcgtgtgctgtcttccacccccgg
caggaactgatcctcagcaattcagaagacaaaagcatccgtgtctgggatatgtcgaaa
cgcacgggtgttcagacctttcgccgtgatcacgatcgcttttgggtactggcagctcat
cccaacctcaacctctttgctgcaggccatgacggtggcatgattgtgttcaaattggag
cgtgagcggcctgcttatgctgtgcacgggaacatgctgtattacgtgaaggaccgtttc
ctccgccagcttgattttaacagttccaaggacgttgctgtcatgcagctgcgaagcggt
tccaagttccctgtgttcaacatgtcgtacaacccagctgagaacgctgtccttctctgc
acaagagccagcaacttggagaacagtacttacgatctatacaccattcccaaggatgca
gattcccaaaatccggacgcccctgaagggaaacgttcctccgggctaacagctgtgtgg
gtagctcgtaaccgctttgcagtcctggatcgaatgcattcgatcctaatcaaaaacttg
aagaatgagatcacgaagaaggtgcaggtgccgaactgtgatgagattttctatgctggc
acagggaacctgttactgagagatgcagactccatcaccctctttgacgtgcagcagaag
cggactctggcctcggtgaagatctccaaggtgaaatacgttatctggtcggctgacatg
tcccacgtagctctgctggccaagcatgccatcatgatctgcaacagaaagctggaatcc
ctgtgtaacatccacgaaaacatccgtgtcaagagtggtgcctgggatgaaagcggtgtt
ttcatctataccacgagcaaccacatcaaatacgctgtcaccacaggggatcatggaatc
atccgcaccctggaccttcctatctacgttacccgtgtgaaggggaacaacgtgtactgc
ctggacagagaatgccgccccagggtcctcaccattgatcccacagagttcaaattcaag
ctggcattgattaacagaaagtatgatgaggtactgcacatggtgaggaatgctaagctt
gtgggccagtccatcattgcctacctgcagaaaaagggctaccctgaggtggccctgcac
ttcgtcaaagacgagaagacccgtttcagcctggcactggagtgtggcaacattgagatt
gctctggaagcagccaaggctctggatgacaagaattgctgggagaaactaggagaagtg
gcattactgcagggaaatcaccagattgtggagatgtgctaccagcgcaccaagaacttt
gataggctctcctttctctatcttatcactggcaatctggagaagcttcggaagatgatg
aagatagctgagatccgtaaggatatgagtggccactaccagaatgccttgtatctagga
gatgtggcagagagagtgaggatcctgaagaattgtgggcaaaagtccctggcctatctc
acagctgcaactcatggtctggatgaagaagctgaaaacctgaaggaaacctttgatcct
gaaaaggaaacgattccagacatcgatcccaatgcaaaactgctgcagcctcctgctcct
gtcatgcctctggataccaactggccattgctgactgtttccaaggggttctttgaagga
acaattgctagcaaaggcaaagggggtgccttagctgctgacattgatattgacaatgtt
ggcactgaaggctggggagaagatgcagaattgcagctggacgaagatggctttgtggat
gctggagaaggctttggagaggaaggtctaggtaaaggacaggaagaaggaggtggatgg
gaagttgaagaagatttggatcttccccctgaactggatgttcctgctggtccagcagga
ggagcagaggatggattctttgtgccacccaccaagggcaccagcccagctcaggtgtgg
tgtaacaattcacagcttcctgttgaccacattctggcaggctcctttgagacagcaatg
agactcctccatgaccaggtaggagtaaccaactttgggccctacaagcagctgttcctg
cagacctacgcccgtggccgtacaacctaccaagccctgccatgtctccctaccatgtat
ggatacccacatcgcaactggaaagaagctggcttgaagaatgctctccctgctgtggga
ctgaagcttaatgacctgatccagcgcttgcagctgtgctaccagctcacgacagctggc
aagtttgaggaggctgtggagaagttccgctccatcttgctcagtgtgcccttgctggtg
gtggacaacaagcaggagattgctgaggcccagcagctgatagccatttgtcgggagtat
atcgtgggactctcaatggagattgagcggaagaagctgcccaaggagaccctggagcac
cagaagcgaatctgtgagatggctgcctatttcacccactccaacctgcagcctgtccac
atgatcttggtcctgcgcactgcacttaacctcttcttcaaactcaaaaacttcaagaca
gctgctacttttgctcgtcggctactagagctgggtccaaagcctgaggtggcccagcag
acccgcaagatcttgtcagcgtgtgagaagaatcccactgacacctaccagcttaactat
gacatgcacaaccccttcgacatctgtgccgcctcttaccgacccatctatcgtggcaaa
cccgtggagaagtgtccgcttagtggagcctgctactgccctgagttccaggggcagatc
tgccgtgtcacaacagtgacagagatcggcaaggatgtcattgggctgcggatcagcccg
ctccagttccgctag

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