KEGG   Oxyura jamaicensis (ruddy duck): 118178922
Entry
118178922         CDS       T11549                                 
Symbol
DHX8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Pathway
oja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118178922 (DHX8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oja03041]
    118178922 (DHX8)
Enzymes [BR:oja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     118178922 (DHX8)
Spliceosome [BR:oja03041]
 Complex C
  Other components
   Step II factors
    118178922 (DHX8)
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 Helicase_C WHD_HA2 DEAD AAA_22 GIPC1_GH2 PRP38_assoc AAA_19 nSTAND3 Flavi_DEAD AAA_16 T2SSE nSTAND_NTPase5 PhoH TsaE Sigma54_activ_2 OB_RRP5_4th Cas3-like_C_2
Other DBs
NCBI-GeneID: 118178922
NCBI-ProteinID: XP_035203718
LinkDB
Position
27:join(3397304..3397415,3398612..3398697,3399273..3399345,3399800..3399885,3400046..3400155,3401378..3401689,3401955..3402099,3402641..3402844,3403342..3403429,3403752..3403849,3404005..3404152,3404576..3404757,3405166..3405360,3405592..3405777,3406324..3406534,3406809..3406990,3407506..3407646,3407906..3408061,3408625..3408762,3409095..3409223,3410181..3410377,3410514..3410693,3411230..3411449)
AA seq 1192 aa
MADLVALEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKNTTFDTFKAVLLK
NGAEFTDSLISNLLRLIQTMRPPSKPSTSKEAVVKPKSEKERLKELFPALCRPDNPNIRN
MLDEDDVKVAADALKELEALMPSADRQGKQRNSDHRTKKKRRSRSRSRDRRRRHRSRSRS
RSRTRDRNRGKSRYRSRSRSRSPSRDRRDRDKYLEKGNERWRDKHVDRPPPEEPSIGDIY
NGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG
SKTSLSMKDVDQDTGEDLNPNRRRNLVGETNEETSMRNPDRPSHLSLVNAPEVEDDTLER
KRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPF
LRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNTH
WVDPLPDVDGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESLPIF
RLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAK
RVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAH
ERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILY
TKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELI
ILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSK
TGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLAST
VLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPM
LCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAV
YNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQKAIC
SGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTI
DPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq 3579 nt   +upstreamnt  +downstreamnt
atggcggacctggtggcgctggaggagctcgccaagctcgagtacctgtcgctggtctcc
aaggtgtgcacggagctggacaaccacctgggcatcaacgacaaggacttggccgagttt
gtcataagccttgctgagaaaaacactacgtttgacacgtttaaagctgttcttctgaag
aatggtgctgaattcacagattcccttattagtaatctgctccgtctcatacagacaatg
cggcctccatcgaaaccatctacaagcaaagaggccgttgtcaaacccaaatcagaaaag
gaaaggttgaaggagttgtttccagctctttgcaggccggacaatcccaacatcaggaat
atgctggatgaagatgatgtgaaagtggcagctgatgcgcttaaagaacttgaagctcta
atgcctagtgcagacaggcaaggcaaacaaaggaacagtgaccaccggacaaagaagaag
aggaggagccgaagccgtagcagggacaggagacgaaggcacagatctcgctctaggtct
cgttctaggactcgggataggaacaggggaaaatccagataccgctcacggagcaggagt
cggagtcctagtagggaccggagggatcgagataaataccttgaaaagggcaatgagaga
tggagggacaagcacgtagaccgtccaccgcctgaggagccttccatcggagacatttat
aatgggaaagtcacgagtataatgcagtttgggtgctttgtgcagctggaaggactaagg
aagcgctgggagggcttggtccacatctcagagcttcgaagagaaggacgggttgccaat
gttgccgatgttgtgagcaaaggacaaagagtaaaagtcaaagtgttatcctttactgga
tccaaaaccagcctgagcatgaaggatgttgatcaagatactggggaagacttgaatcca
aaccggaggaggaacctggttggagaaaccaacgaagaaacttctatgagaaacccagac
agacccagccacctgtccctggtgaatgccccggaggtggaggatgataccctggaacgg
aaacgcctcacccgaatttcagacccagagaaatgggaaataaaacagatgattgcagct
aatgtgctctctaaggaagagtttcctgactttgatgaggagaccgggattcttcctaaa
gttgatgatgaagaagatgaggatcttgagattgagttagttgaagaagagccaccattc
cttcgaggtcatactaaacaaagcatggatatgagtcctatcaaaatagtaaagaatccg
gatggttccttgtcccaggctgcaatgatgcagagtgctttagctaaagaaagacgagaa
cttaaacaagcacaaagagaagcagagatggattctattcccatgggtctcaacacacac
tgggtggatcctctccctgatgtggatggaagacaaatagccgcaaacatgcgaggtatt
gggatgatgccaaatgatatcccagagtggaagaaacatgcatttggtggcaacaaagcc
tcatatggtaagaagacacagctctctatcattgagcagagagagagtctcccaatcttc
agactgaaggagcagctgatacaagctgtgcatgacaaccagattctgattgtaattgga
gagacggggtctgggaagacaacccagattacccaatacctggctgaggcgggatataca
tcaagaggaaagatcggatgtactcagcctcgcagagtggccgcaatgtctgttgcaaag
agggtgtcagaggagttcggttgctgtttgggacaagaggttggctacaccattcgattt
gaagactgcactagccctgaaactgtcatcaaatacatgacagatggtatgttactgagg
gagtgcttgatagatcctgatctgacccagtatgccattatcatgctagatgaagcccat
gagaggacaattcatacagatgtgctctttggactcctgaagaagacggtgcagaaacgg
caggatatgaagttgatagtgacatcagcgacactggatgctgtcaaattctctcaatat
ttctatgaagctccaatcttcacaattcctggcagaacatacccagtagaaatcctgtac
acaaaagagccagagacagattatttggatgctagtctaattacagtaatgcagatccac
ttaacagagccaccaggtgacattttggtgtttctaactggtcaagaagagattgacact
gcctgtgagatcctctatgagaggatgaaatctctaggacctgatgttccagagttaatt
atcctgccagtatattcagccttacccagtgaaatgcaaaccaggatctttgacccagcc
ccaccagggagcagaaaggttgtcattgccactaacattgctgagacgtcgcttactatt
gatggaatatattatgtggttgatcctggctttgtgaagcagaaagtttacaactccaag
actggaatcgaccagctggttgttacaccaatttcacaggctcaagcaaagcagcgagca
ggaagagctgggagaacggggccaggaaaatgctataggctgtatacagagcgtgcctat
cgagatgaaatgctaactaccaatgttcctgaaatccagagaacaaatttggccagtaca
gtactctccctgaaggccatgggcatcaatgatttgctctcctttgactttatggatgct
cccccaatggaaacgctcataactgccatggagcagctgtacactctgggagctctggat
gatgaaggactactcactcgacttgggcgcaggatggcagaattccccttggagcctatg
ttgtgcaagatgttgatcatgtctgtacatctgggatgcagcgaggaaatgctgacaata
gtctccatgctgtctgtacagaatgtgttctacaggccaaaggataaacaagcacttgct
gatcaaaagaaagccaagttccaccagacagaaggagaccacctcactctgctggctgtc
tacaattcctggaagaacaataagttttcaaatccctggtgctatgaaaattttatccaa
gcccggtccttacgcagggcacaggacatccgcaagcaaatgttgggcattatggacaga
cacaagctggatgtggtgtcctgtggcaaggcaacagttcgagtccagaaggccatctgc
agcggcttcttccgaaatgctgcaaagaaggatccccaggagggttatcggacgctcatt
gaccaacaggtggtctatatccacccatccagtgctctcttcaacagacaaccggaatgg
gtggtgtatcatgagctagtgctgaccaccaaggagtacatgcgtgaagtgacaactatt
gatccacgctggctggtggaatttgcaccagcattcttcaaggtttctgatccaaccaaa
ctgagcaaacagaaaaagcagcagcggcttgaacccctctacaatcgctatgaggagccc
aacgcttggaggatatcacgtgcattcagacggcgatga

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