KEGG   Oxyura jamaicensis (ruddy duck): 118179088
Entry
118179088         CDS       T11549                                 
Name
(RefSeq) scaffold attachment factor B1-like isoform X1
  KO
K25092  scaffold attachment factor B
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oja03041]
    118179088
Spliceosome [BR:oja03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    118179088
SSDB
Motif
Pfam: RRM_1 SAP RRM_5
Other DBs
NCBI-GeneID: 118179088
NCBI-ProteinID: XP_035204034
LinkDB
Position
28:complement(join(3642..3768,3984..4050,4245..4357,5071..5192,6013..6052,6830..6967,7794..8087,8521..8657,9194..9282,10019..10158,11042..11142,11240..11389,12028..12128,12833..12882,13300..13798,14727..14754,15402..15473,16568..16846,16932..16996,18018..18105,19021..19209))
AA seq 962 aa
MAESQPATGQGEPVAPGGSGGPSSEPETRRLSELRVIDLRAELRRRNLDSGGNKSVLTER
LRKAIEEEGGNPDEIPAVSEIVNKKTSKRSSKGRRPDEEGVEDNGLEEDSGDGQEDIEAS
LDNFQDIDMMDISVLDEAEIDNGNAVDCGEDCSADNILDSLSDSKENADAETKGLPDQPT
AYAVRNLEASPQFSEIKEESGEIPVAMVEAEDVGNSFSAASSDLTVIKVNCETEELPLEP
ENEKILDILGETCKSELLNEETSEVEQPHAQEASNVVPGKRLAEEEDVLAAAQLEEDALD
LDSKSAQAMSRKEAKRLVVAKGERSEQTIEEEKPDSESLVLETLSDQSSKRFQGLEASSG
ETAEKGAGPEGKDSKEDAKKTEDKANSEESPATRESSTSEGGDQKKSPVEEDRDTKMISR
DEKGRAGSGSGRNLWVSGLSSSTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTM
STSEEATKCISHLHRTELHGKMISVEKAKNEPAGKKPADKKEGEARKEKDRHHSADCKSE
KSVGIKKEDKTDKKDDAKKSEKDGKDEGKEKDDQKAGPSDRSRASKSASRGTERTVVMDK
SKGEPVISVKTSASKERSTKSQDRKSGSKEKQDILSFDKIKEQRERERQRQREREIRETE
RRRERERREREQRLQAIHERDERQRLQRERERLEFQRQRLDRERLERERLERERMHIEQE
RRREQERIQREREELRRQQEQLRYEQERRSAMRRPYDPDGRRDDPYWPEAKRMAMDDRYH
SEFGRQDRFHDFDHRDRGRYQDHSLDRREGSRGIPDRDGQHYPDERHGGPDRHSRDSRDS
WGGYGSDRRMNEGRGIPPQTRDGRDWGDHGRKLEGHQDRSWQGNVDGGMMGRDHERWQGG
DRSMPGQSGPGHVMNRGGIPGRGGFTQGGNQSQIMQSGGIQGGFAGQERTNRLTETRFTR
RY
NT seq 2889 nt   +upstreamnt  +downstreamnt
atggcagagagccagccagcgaccgggcagggagagcctgtcgccccgggtgggtcggga
ggccccagctcggagccggagacccggcggctgagcgagctgcgcgtgatcgacctgcgg
gcagagctcaggcgccgcaacttggacagcggcggcaacaagagcgtcctgaccgagcgc
ctcaggaaggctattgaggaggaaggggggaatcctgatgaaattccagcggtttcagaa
attgtcaacaagaaaacttcaaaaagaagcagcaaaggacgtagaccagatgaagagggg
gttgaagacaatggcttggaagaggattctggagatggacaggaggatatcgaagcaagt
ttggataactttcaggatattgacatgatggatattagtgtgttagatgaagctgaaata
gataatggcaatgctgtagattgcggagaggactgcagtgctgataatattcttgactcg
ctgtctgacagtaaagaaaatgctgatgcagaaacgaaaggacttccagatcagcctaca
gcatatgctgtacgtaacttggaggcatccccacaattttctgaaattaaagaagaatca
ggagaaataccagtagcaatggtagaggctgaagacgttggaaacagtttcagtgccgct
tcgtctgatttaactgtaataaaggtaaattgtgaaactgaagaattacctttggagcca
gaaaatgagaaaatactcgacattttgggggaaacttgtaaatctgaactacttaacgaa
gaaacttccgaagtggagcagccacatgcacaggaagcaagtaacgtggtgccaggcaag
aggctagcagaggaagaggatgttcttgctgctgctcagttggaggaagatgctttagat
ttggacagcaaatcggcacaagctatgtcaaggaaggaggcaaagcgtttagttgtagca
aaaggggagagaagtgaacagacaatagaggaagagaaaccggactctgaatctttagta
ttagagaccctaagcgatcagagtagcaaacgattccaaggcctggaagcctctagtggg
gaaacagcggaaaaaggcgcaggtcctgaaggcaaagatagcaaagaagatgccaagaaa
acagaagacaaagctaattctgaggaatcccctgctactagagagtcctcaaccagtgag
ggcggtgatcagaaaaagagccctgttgaggaggacagagatacaaagatgatctcaaga
gatgagaaaggtcgtgcaggtagtggttctggcagaaatttgtgggttagtggactttct
tcatctactagagctacagacttgaagaatcttttcagcaagtatggaaaggtggttggt
gcaaaagtagtgacaaatgctcgcagtcctggtgctcgctgttatggctttgttacaatg
tcaacatctgaagaagccaccaagtgtattagtcatctccacagaacagagctgcatgga
aaaatgatttctgtggaaaaggcaaaaaatgaaccagctgggaaaaagcctgcagacaaa
aaggaaggggaagcaaggaaggaaaaagacaggcaccattcagcagattgcaaatccgag
aagtctgttggtattaaaaaggaggataagactgacaaaaaagatgatgctaagaaatca
gaaaaagacggaaaagatgaaggaaaagagaaagatgatcagaaagcgggaccctctgat
cgatctagagcaagcaaatcagcaagtcgaggaactgaaaggactgtggtaatggataaa
tccaaaggagagccagttatcagtgtgaaaacgtctgcatcaaaagagagaagtacgaaa
agccaggatcgtaaatctgggagcaaagagaaacaagatattttatcatttgataaaatc
aaagaacagcgagaacgtgaacgtcagaggcagagagagagagaaatcagggaaacagag
aggcgacgagagagagagaggcgagaacgagaacaacggcttcaagccattcatgaacgg
gatgagagacagaggctccagagggagcgggaacgacttgagtttcaaagacagcgtctt
gacagagaacgcttggagagggagagattggagagagaaagaatgcacatagagcaggaa
agaaggagagaacaggaacgaattcagcgagagagggaagagctgcgacgccagcaggaa
cagctacgctatgaacaagaacggcgatctgcaatgagaaggccatatgatcctgatggc
aggcgagatgatccttactggccagaggcaaagcgaatggcaatggacgataggtaccac
tctgaatttggtcgtcaggaccgcttccatgactttgaccacagggatcgtggccgatac
caagatcattctttggacagaagagaaggttcgcgagggataccagatcgagatgggcag
cattacccagatgaacgccatggagggccagaccgtcattcccgggactcccgggatagt
tggggtggctatgggtctgacagaagaatgaatgaagggagagggatacctccacaaacc
cgagatggacgtgactggggagatcatggtcgaaagttagaggggcatcaagatcgttca
tggcagggaaatgtggatggaggaatgatgggacgggatcatgagagatggcaaggtggt
gatagaagcatgcctggtcagtcaggaccaggccatgtgatgaatcgaggagggatacca
gggcgtggaggcttcacacaaggtggaaaccagagccagataatgcagagtggtggaata
caaggaggttttgcaggccaggagagaacaaacagactgactgaaacccgttttacccgc
cgttactga

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