KEGG   Oxyura jamaicensis (ruddy duck): 118179140
Entry
118179140         CDS       T11549                                 
Symbol
KDM4B
Name
(RefSeq) lysine-specific demethylase 4B
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
oja  Oxyura jamaicensis (ruddy duck)
Brite
KEGG Orthology (KO) [BR:oja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:oja03036]
    118179140 (KDM4B)
Enzymes [BR:oja01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     118179140 (KDM4B)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     118179140 (KDM4B)
Chromosome and associated proteins [BR:oja03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    118179140 (KDM4B)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD SLX1_C DUF7141 DUF4537 SLX9
Other DBs
NCBI-GeneID: 118179140
NCBI-ProteinID: XP_035204141
LinkDB
Position
28:complement(join(2707233..2707418,2709324..2709416,2712382..2712501,2713290..2713454,2713581..2713766,2718865..2718973,2719458..2719513,2719686..2719762,2721629..2721851,2723017..2723195,2726429..2726546,2727648..2728153,2733330..2733499,2737565..2737597,2738092..2738288,2752422..2752559,2756748..2756851,2759996..2760045,2776725..2776918,2778373..2778487,2779720..2779895,2781949..2782089))
AA seq 1111 aa
MGSENPSPQNPGCKIMTFRPTLEEFRDFGKYIAYIESQGAHRAGIAKVIPPKEWKPRKTY
DDIDDMVIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLER
KYWKNLTFVSPIYGADISGSLYDADVEEWNIGNLNTLLDMVEHECGIIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYGIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRKDMVKISMDVFVRVLQPERYDLWKQGKDIAVLDHMKPTALTSPELDAWNE
TKAELKAKLLRRIGDEEEDNKHRSHRKRSQPRRHKTEDQKSIGDVMAIETALEDVKVKEE
LKRGPDLEEEERSKATEGEGDCKVKARPPKVKGERKKKHLFHQHQHHLQAPQPQQQQPPL
PPAPQQQLAVEEAPAARPPAPAAVPTSSTAEKSLPPAPLNIIQPSETPVEEDDFKPRPII
PMLYVVPRTKKVVFDKERMSCQQAFEQFATQKSPGWREQTVPLEIPMKEEENAEAGNTEI
ATEVSGLQTAAFSKMKMEIKKSRRHPLGKPPTRSPLSVVKQETSSDEETFPFSGEEDMSD
PEALKSLLSLQWKNKPHNFPAERKFNAAAALSEPYCAVCTLFYPYNQSLQVDKEAAPVSA
GETTSFVHLSKCGQKTKPLIPEMCFTSSGENTEPLPSNSYIGEDGTSPLISCAKCCLQVH
ASCYGIRPDLVNESWSCSRCSANAWAAECCLCNLRGGALQMTTDGRWIHIICAIAVPEAR
FLNAIERHPVDISAIPEQRWKLKCVYCRKRMKKVSGACIQCSYEHCSTSFHVTCAHAAGV
PMEPDDWPYVVSITCFKHKAANQNVQLRREVTLGQTVITKNRNGLYYRCKVIGTTTQTFY
EVNFDDGSYSDNVYPESIISRDCIQMGPPPEGEMVQLQWTDGIVYKAKFIAAQISQIYQV
EFEDGSQLMVKRGDIYTLEEELPKRVKSRLSLSTGAPQEDVFSGDEVRAAKRPRLGNSRN
PEEYGQNPDYLAFMESLLQTQYQPGTQSNMF
NT seq 3336 nt   +upstreamnt  +downstreamnt
atggggtctgaaaacccaagtccgcagaatcctggctgtaagatcatgacctttcgtccc
accctcgaggagtttcgggacttcgggaaatatattgcctacattgaatcgcaaggagct
caccgagcagggattgccaaggtgattcctcccaaggaatggaagccacgaaaaacctat
gatgacatagatgatatggttatcccagctcccattcagcaggtggttactggccagtcg
gggttattcacccagtacaacatacagaagaaaccaatgactgtgggagagtaccggcgt
ctggctaatagcgagaagtattgtactccacgccatcaagattttgaagacttggagcgc
aagtactggaagaatctcacgtttgtctcaccaatttatggggctgatatcagcggctca
ctatatgatgcagatgtggaagaatggaatattggcaatctgaacaccctcttagacatg
gtggaacatgagtgtggtattattatagaaggagtaaacactccgtacctctactttggg
atgtggaagacgacgtttgcttggcatacagaggacatggatctctacagtatcaactac
ttgcattttggggagccaaaatcctggtatgccattcctccagaacacggcaagaggctg
gaacgcctggcgaaaggattttttcctggaagctctcagggatgcgatgctttcctccgt
cacaagatgaccctcatttcgccgtcaatcttgaagaagtacggcattccttttgaccgg
atcacccaggaagctggagaattcatgattacatttccttacggttaccatgctggcttc
aatcatggcttcaactgtgccgagtctaccaactttgccactttgcgatggatcgactat
ggaaaaatggcaacccaatgtacttgccgcaaagacatggtgaagatttccatggatgtc
tttgtgagggttctgcaaccagaacgttacgatttgtggaaacaaggaaaagacattgct
gtcctggaccacatgaaacccacggctctgactagcccagaactagatgcctggaatgag
acgaaggcagaattgaaggccaaattgcttcgcaggataggagatgaggaagaggacaac
aaacaccggtctcacagaaaaagaagtcaacccagaagacataaaacagaggatcagaag
tctattggggatgtcatggctattgaaacggccttggaagatgtgaaagtaaaagaggaa
ctgaaaagggggccagatctagaggaagaagagagaagcaaagcaactgagggagaaggt
gactgcaaagtaaaggcccgtcctccgaaagtaaaaggtgagaggaagaagaagcacctt
ttccatcaacaccagcaccatctgcaagcaccgcagcctcagcagcagcagccacccctg
ccgccggcaccgcagcagcagttggcagtggaggaggcaccagcagcacgtccaccagca
cccgcagcagtacccacgtcatccacagcagagaagagcttgcccccggctcccctgaac
attatccagccttcggagacgccagttgaggaagatgactttaagcctcggcctatcatt
cccatgctttatgtggttccacggaccaaaaaggtggtgtttgacaaggagcgcatgtcc
tgccagcaggcgtttgagcagtttgcgacacaaaaaagtccaggttggcgggaacagacg
gtccctttggaaatccctatgaaggaggaggagaacgcagaagcaggaaatacagagatt
gctacagaggtcagtggtttacagaccgctgctttttcaaaaatgaagatggagataaag
aaaagtcgtcgtcatccactgggcaaacccccaacccgctccccgttgtcggttgttaaa
caggagacctcgagtgacgaggaaacgtttccgttttctggggaggaagatatgagcgac
ccggaggctttgaaatcgttactttcccttcagtggaagaataaaccacataatttccca
gctgaacgaaaattcaatgcagctgctgcactgagtgagccatactgcgctgtctgtacc
ctcttctacccatataaccagtctttacaggtggataaggaagctgccccagtctctgca
ggggagaccacctccttcgtccacctttctaagtgcggacaaaagaccaagcctctgatc
ccagagatgtgctttacctcaagtggagaaaacacagagcctcttccttcaaattcatat
attggagaagatggaaccagtcccttgatttcctgtgccaaatgctgcctgcaggttcat
gctagctgttatggaatacgtccagatttggtgaatgaaagctggtcttgctcacggtgc
tcagccaacgcatgggcagcggaatgctgcctgtgtaatctcaggggaggagctcttcag
atgaccactgatgggcggtggatccatataatctgtgctattgctgtccctgaggctcgt
tttctcaatgctatagagcgtcatcctgtggatatcagcgctattccagagcagagatgg
aaactgaaatgcgtgtactgtcggaagcggatgaagaaagtgtctggtgcctgcatccag
tgctcctatgagcactgctctacttccttccatgtgacctgtgcgcacgctgctggtgta
cccatggagccggatgactggccctacgttgtgtccatcacttgcttcaaacacaaagca
gctaaccagaatgttcagcttcgaagggaagtgacccttggacagactgtgatcacaaaa
aaccggaatggactctactacaggtgtaaagtgattggcacgacaacacagactttctat
gaagtaaactttgatgatggctcatacagtgacaacgtttacccagaaagcattattagc
agagactgcatccaaatgggaccccctccagagggtgagatggttcaactgcagtggaca
gatggaattgtctataaggccaagtttattgcagcccagatcagtcagatttatcaggtt
gagtttgaagatggctcccagctaatggtaaagcgtggtgatatttataccttggaggaa
gagcttccaaagagagtcaagtctcgcctgtccctcagcactggggcccctcaggaagat
gtattttcgggagatgaagtgagagcagccaagcgcccccggctggggaattcaagaaat
cctgaagaatatggacaaaacccagattacttggcctttatggagagcctgttgcagacg
cagtaccaacctggaactcagagcaacatgttttaa

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