Oceanobacillus jeddahense: NP439_00825
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Entry
NP439_00825 CDS
T08779
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ojd
Oceanobacillus jeddahense
Pathway
ojd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ojd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NP439_00825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ojd03021
]
NP439_00825
03400 DNA repair and recombination proteins [BR:
ojd03400
]
NP439_00825
Enzymes [BR:
ojd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NP439_00825
Transcription machinery [BR:
ojd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NP439_00825
DNA repair and recombination proteins [BR:
ojd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NP439_00825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
DUF961
SAM_EPH
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
UUI03296
UniProt:
A0ABY5JW60
LinkDB
All DBs
Position
155544..156488
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETIEVSEDATFGKFVVEPLERGYGATLGNSLRRILLSSLPGAAVTSVHIDG
ALHEFSTIDGVVEDVTTIILNLKKLALKIYSDEPKTLEIDVQGEGAVTAADLTYDSDVEV
MNPDLHIATLNSKASLHMKLTAERGRGYRPADENKFDDQPIGVIPIDSIFTPVSRVTYQV
ENTRVGQIANYDKLTLDVSTDGSIRPEEAVSLGAKIITEHLNIFVSLTDEAQNVEIMVEK
EEDQKEKVMEMTIEELDLSVRSYNCLKRAGINTVQELANKSEEDMMKVRNLGRKSLEEVK
VKLEDLGLGLRDDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagatagaaaagccaaaaattgaaacgattgaagttagcgaggacgctacgttt
gggaaatttgtagttgaaccgctagaacgtggatatggtgccacacttggaaactccttg
cgtcgtatcttactatcctcactaccaggtgctgctgtaacatctgttcatattgatgga
gcactgcacgaattttcaacgattgacggggttgtggaggatgtaactactatcattctt
aacttgaaaaaacttgctcttaaaatctactcagatgagccgaaaacattagaaattgat
gtgcaaggcgaaggagcggtgacagctgcagacttaacctatgatagtgatgtcgaagtg
atgaatccagatcttcatattgctacattaaacagtaaagctagccttcatatgaagtta
actgctgaaagaggtcgcggatatcgtccggcagatgaaaacaagtttgatgatcaacca
attggtgttattccaattgattccattttcacaccagtatcacgtgtgacgtatcaagta
gaaaacacacgtgtaggtcaaatcgctaattatgataaactaacattagatgtttcgacg
gacggtagtattcgcccagaagaagctgtttccctgggtgcgaaaattattacggagcat
ttaaatatttttgtgagcttaacagatgaagcacagaatgtggaaattatggttgaaaaa
gaagaagatcaaaaagaaaaagtgatggaaatgactatcgaagaacttgatctttctgtt
cgttcttacaactgcttgaagcgtgctggtatcaatactgttcaagagcttgcaaataaa
tctgaagaagatatgatgaaggttcgtaatttaggacgtaaatcattagaagaagtaaaa
gtgaaattagaggatctaggactaggtcttcgagatgatgactga
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