Oceanobacillus jeddahense: NP439_11610
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Entry
NP439_11610 CDS
T08779
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
ojd
Oceanobacillus jeddahense
Pathway
ojd00550
Peptidoglycan biosynthesis
ojd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ojd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
NP439_11610 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ojd01002
]
NP439_11610 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ojd01011
]
NP439_11610 (dacB)
Enzymes [BR:
ojd01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
NP439_11610 (dacB)
Peptidases and inhibitors [BR:
ojd01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
NP439_11610 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
ojd01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
NP439_11610 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
UUI05241
UniProt:
A0ABY5JY42
LinkDB
All DBs
Position
2357106..2358470
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AA seq
454 aa
AA seq
DB search
MEKLNDFLKNTCNNEGSILGLSIRSSITGKSLYDYFASTRLQPASNLKILIAAAALKKLG
SDYTFQTELYTDGEIVNETCHGNIFLIGKGDPTLQEKDYLQFITSLKEKGIKQISGDFIL
DDTWYDDERWSDDLIWADQQYAYGAEVSALTLAPDADYDTNAIKLKIAPGMLNTAPSVNI
LPHSEGITITNTAVTTEEADEEDLIIKRDFAENHFFISGKIGIKEGKQDIYMAIKGAENY
IAKMICQILKNTGIVLEGQIKRGKTKTNVECIYQQQSLPLSKIMIPFMKLSNNGIGEMLT
KELGRIAYGDGSWESGIAAVKETLASYQINLETMQLKDGSGISAANFVPAGELTRLLFEI
QQEKWFPAFLTSLPIAGEADKMVGGTLRNRMKGRAVQAKTGTIEGVSTLSGYVTNVNGER
LIFSILFNHLLDADKGKDLEDELVTILAEIGDWG
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggagaaactaaatgactttttgaaaaatacgtgtaacaacgaaggaagtattcttgga
ttaagtattcgatccagtattactggtaaaagtctatacgattattttgcatcaacacgt
cttcaaccagcttctaacttgaaaatactgatagcagctgcagcattaaagaaattaggt
tctgattatacatttcaaacggaactttatacagatggagaaattgtaaatgaaacctgt
catggaaatatatttttaattggaaaaggcgatccgactttgcaagaaaaggattatttg
caatttataacttctttaaaagaaaagggaataaagcagatttccggagattttattctt
gatgacacctggtacgatgatgagcgttggtcagatgatttaatttgggctgatcagcaa
tatgcatatggtgcagaagtgtctgctttaacgcttgctccagacgcagattatgatacc
aatgctattaaattgaagatagccccaggaatgttaaatacagcaccaagtgtaaatatt
ctgccgcatagtgaagggattacaattacaaatactgctgtaacgacagaagaagcagat
gaagaagacctcattataaagcgggattttgcggaaaaccatttttttatatctggaaaa
attgggataaaagaaggaaagcaagatatatatatggccatcaaaggtgctgaaaattat
atcgcaaaaatgatttgtcagattttaaaaaatacaggtatcgttttagaggggcaaata
aaaagaggaaaaacaaaaacaaatgtagaatgtatttatcaacagcagtcattgccattg
tctaaaattatgattccatttatgaagctgagtaataatggaattggtgagatgcttacc
aaagaattaggacggattgcatatggtgacggttcatgggaatccggaatagcagcagta
aaagaaaccctggcttcatatcaaattaatctggaaacgatgcaattaaaggatggttcc
ggaatttcagcagctaacttcgttcccgcgggagaattaacacgtttactttttgaaatt
cagcaggaaaagtggtttcctgcatttttaaccagtttaccaatagctggagaagcggat
aaaatggtcggaggaacactgcgcaatcgaatgaaagggcgagctgtccaggcaaaaaca
ggaaccattgagggtgtcagcacgctttccggttatgtgacaaacgtaaatggggaacgg
ctaattttttctattttatttaatcatttattggatgcggataaaggaaaagatttagaa
gatgagctggttactatattggctgaaataggggattggggttaa
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