Oceanobacillus jeddahense: NP439_16015
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Entry
NP439_16015 CDS
T08779
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ojd
Oceanobacillus jeddahense
Brite
KEGG Orthology (KO) [BR:
ojd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ojd03032
]
NP439_16015 (topA)
03400 DNA repair and recombination proteins [BR:
ojd03400
]
NP439_16015 (topA)
Enzymes [BR:
ojd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NP439_16015 (topA)
DNA replication proteins [BR:
ojd03032
]
Prokaryotic type
DNA Topoisomerases
NP439_16015 (topA)
DNA repair and recombination proteins [BR:
ojd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NP439_16015 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
HypA
Toprim_2
DUF5067
Zn_ribbon_IS1595
Zn_ribbon_RPAB4
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UUI01550
LinkDB
All DBs
Position
complement(3250949..3253027)
Genome browser
AA seq
692 aa
AA seq
DB search
MSDYLVIVESPAKAKTIERYLGKKYTVKASMGHLRDLPKSQMGVNVEENYEPKYITIRGK
GDILKDLRKSAKKAKRIYLAADPDREGEAIAWHLAHILNVDEQSKCRVVFNEITKDAIKE
SFKHPRPIDLDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVALKMIIDREK
EIENFKPEEYWSIDGLFAKGKEIFEGSFYGMDGKKTKLQTKEDVEEVKKKLDGKEFTIQS
VKKRERKRNPALPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGRSSGGITGLITY
MRTDSTRISDGAKEEAKGYIKENYGENYLGKQAPTKNKSGAQDAHEAIRPTSTLRDPKEL
KSILSRDQLRLYKLIWERFVASQMAPAIMDTMTVHLLNNGVEFRATGSKIKFKGFMKVYV
EGNDDNKKLEDKILPDLEEGMKVESKEVKPNQHFTQPPPRYTDARLVRTMEEMGIGRPST
YAPTLDTIQRRGYVSMDNKRFVPTELGTIVCELVEEFFPEVIDAEFTAKMETDLDSIEEG
KTAWIQIIDEFYQDFSKRLEKADAEMEKVEIRDEPAGIDCEECGHEMVYKMGRYGKFLAC
SNFPECRNTKPILKKIGVTCPKCHKGDVVERKSKKKRTFYGCDQFPECDFVSWDKPIART
CPKCDSMLVEKKSKKETQVQCSNCEYKEVAQK
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattatctcgttatcgttgaatcaccagcgaaagcaaaaacgattgaacgatat
ttaggaaaaaaatatacagttaaagcttccatgggacatcttcgtgatttaccaaagagt
caaatgggagtaaacgtagaagaaaattatgagccgaagtatattaccattcgaggaaaa
ggggatatactgaaggatttaagaaaatcagcaaaaaaagcaaaaagaatttatctcgca
gccgacccggatcgtgagggagaagcaattgcgtggcatttagctcatattctaaatgtt
gatgaacagtcaaaatgccgggttgtttttaatgaaattacgaaagatgctattaaagaa
tcgtttaagcatcctcgtccaatagatttagacttagttgatgcgcagcaagcacgcaga
atccttgatcggttagtaggctataatatcagtccattactatggaaaaaagtgaaaaaa
ggattgagtgccggacgagtacagtctgtagcattaaaaatgattattgatagagaaaaa
gaaattgagaattttaagccggaagaatattggtctatcgatggtttatttgcaaaagga
aaggaaatatttgaaggttccttttatggaatggatggtaagaagacgaaacttcaaaca
aaagaggatgtagaagaagttaaaaagaaactggatggaaaagaatttactattcaaagt
gtgaagaaaagagaaagaaaacgaaaccctgcacttccatttactacatcatccctacaa
caggaagcagcgagaaagcttaacttccgggcgaagaaaacaatgatgatcgctcaacaa
ttatatgaaggaatagacttaggccgttcttcagggggaattacaggtttaatcacttat
atgcgtacagactccacaagaatttcagatggagctaaggaagaagcaaaaggatatatt
aaagaaaattatggagaaaattatcttggtaaacaagcccccactaaaaataaaagtggt
gcgcaagatgcccatgaagcaatacgtccaacttccactttgcgtgatccaaaagaatta
aaaagtattttatcgagagatcagctgcgtctgtataaactgatttgggagcgctttgtt
gctagtcaaatggctccagctataatggatacaatgacggtgcacttattaaataatggc
gtagaatttcgtgctaccggttcaaagataaagtttaaaggctttatgaaagtttatgtg
gaaggcaacgatgataataaaaagctggaagataaaatattgccagacttagaagaaggt
atgaaggttgaatccaaagaagtgaaaccgaatcaacatttcacgcaaccgcctccacgg
tatacagatgccagattagttagaacaatggaagaaatggggattggtcgtccatctacc
tatgcgccaactttagatacaattcagcgtagaggttacgtatcgatggataataaacgg
tttgtaccaacagagttaggtacgatcgtttgtgaacttgtagaagagttcttcccagag
gtaattgatgcagaatttactgcaaaaatggaaacagacttagattccattgaagaggga
aagacagcttggattcaaattattgacgaattctatcaagacttcagtaagcgtctagaa
aaagcggatgctgaaatggaaaaagtagaaatacgtgatgagcctgcaggaatagactgt
gaagaatgtgggcatgaaatggtatataaaatggggagatatggtaaatttttggcatgc
tccaactttcctgaatgccgaaatacaaaaccaattttgaaaaaaataggtgtcacttgt
ccgaaatgtcataaaggtgatgtcgtagaaagaaaatcaaagaaaaagagaactttctat
ggctgtgatcaatttccggagtgtgattttgtttcatgggataaaccgattgccagaacc
tgtccaaaatgtgattccatgcttgttgaaaagaaaagtaaaaaagaaacgcaagttcaa
tgctctaattgtgaatataaagaagttgcccagaagtag
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