Oceanobacillus jeddahense: NP439_16925
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Entry
NP439_16925 CDS
T08779
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ojd
Oceanobacillus jeddahense
Pathway
ojd03030
DNA replication
ojd03430
Mismatch repair
ojd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ojd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NP439_16925 (dnaE)
03430 Mismatch repair
NP439_16925 (dnaE)
03440 Homologous recombination
NP439_16925 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ojd03032
]
NP439_16925 (dnaE)
03400 DNA repair and recombination proteins [BR:
ojd03400
]
NP439_16925 (dnaE)
Enzymes [BR:
ojd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NP439_16925 (dnaE)
DNA replication proteins [BR:
ojd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NP439_16925 (dnaE)
DNA repair and recombination proteins [BR:
ojd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NP439_16925 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UUI01721
LinkDB
All DBs
Position
complement(3448093..3451410)
Genome browser
AA seq
1105 aa
AA seq
DB search
MTYTHISVKSGYSLMESTISIQKLVQKAKKFHAQSLCLTDEAVLYGAVSFYKACMDQGIK
PIIGMTVPVQMEGNEQSYPFIVLAKNKNGYQQLLSLSTYLQTNHMDKLPIEQLTEYTEGI
IGVASGKALLQDVNDTMETDNQLLVQQMKRVESYFQTGDFYVGIDPQLHQLQLWQEMDFT
YVAMQDVLYLDEQDVFAYDCLQAMRYGKHWIPKQKEQLPTGHHFTSPEEMKQLFYAWPEL
LDKTEEITDKCTTYLHFDEQHLPSFPTPNQLSADAYLRECCEKGLKERYPTITETHRERL
EYELKTIINMNYSDYFLIVADFIQFAKTNHIMVGPGRGSSAGSIVAYILGITEVDPLKYN
LLFERFLNPERQTMPDIDVDFSDIRRDEVIDYVRDKYGKEHVAQIITFGTYATRSILREL
MKTMNIHDQDVSYILREMKRASSKSIQRLLQDSAELATYVKSSEKLKTLFSIAMKLEGLP
RNVSTHAAGVVISEQPLVTDVPLTSGTGETYLTQYAMNELEAAGLLKMDFLGLRNLSLIE
RVTKSVAYTHKKNDILTDIPEQDEKTFAMLRKGETSGVFQLESAGMQNVLKELQPSSFED
IVAVNALYRPGPMDFIPVYIRRKFKQEPVTYPHPDLEPILKSTYGVLIYQEQIMQIAHRI
AGFSLGDADILRRAVSKKKKEVMQEQEQAFIKGCLKNGYSQAVAGEIFSWIVRFSNYGFP
RSHAVAYSKISYQLSFLKAHYPEVFFSCLLTDAKNQPEKLLAYQESLKEINIDILPPHIN
RSYQQFTVEKKGIRAGLAAIKGISYQALLHVLEIRKEAPFAGFFDFCMRIDIKKVNRAAI
KNLILAGSFDTFHSNRASLIESIAPALEQKELFQGMYEDASLFHDALEYTETADYSMMQK
LHFEKELMGIYISNHPFESYRNVLRANGIVSFKQADQFTDKRKDIFTAGVVEEIKVIRTK
NRERMAFLTVSDEDKKRDAVIFPDLFRQISNHLEEEQIVWMRVTVEKRNQKLQFVIKEIA
AFDLSEVGFPETKKLFIRLTDQDKSSALKYLQQLADQHPGKTPVIVYNSVDKETYQLATN
YSLQLSEKEMKQLKNYFGNDNVVER
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgacgtacacacatatatcagtgaaaagcggctacagtttaatggagagcacgatttct
atacaaaagcttgttcaaaaagcgaaaaaatttcatgctcaaagcttatgtttaactgat
gaagctgttctttacggggccgtttctttctataaagcttgtatggatcaaggaataaaa
ccaattattggaatgactgttcctgttcaaatggaaggaaatgagcagagttatccgttt
attgtacttgccaaaaacaagaatggctatcaacagctgttatccttaagtacctattta
caaacaaatcatatggataaattacctattgaacagcttacggaatatacagagggtatc
attggtgtggcgtctggaaaagcgcttctgcaagacgtcaacgataccatggaaacggac
aaccaattacttgtacaacaaatgaaaagggttgaatcatactttcaaacaggtgatttt
tatgttggaattgatccccagttacatcaacttcaactttggcaagagatggacttcact
tatgttgctatgcaggatgttctatatttagatgagcaggatgtattcgcttatgattgt
ttgcaagcaatgcgctacgggaagcattggattccaaaacagaaagaacagttgcctaca
gggcatcattttacttctccagaggaaatgaaacaattattttatgcttggccggaacta
ctggataagaccgaagaaatcacggataaatgtacaacctacttgcattttgatgagcag
catctgccatcctttccaacaccaaatcaattatcagcagatgcctacttacgagaatgc
tgtgaaaaagggttaaaggagcgttatccaaccattacagagacgcatagagagcgatta
gaatacgaactgaaaacaattataaatatgaattatagtgattattttttaattgttgct
gattttattcaatttgcgaaaacgaatcacattatggttggaccaggcagggggtcttca
gcaggatctattgtagcttatattttagggattacagaagttgatccattaaaatataat
ctgttattcgaacgttttttaaatccagaaaggcaaaccatgccagatattgatgtagat
ttttctgatattcgacgtgatgaagtgattgattatgttagagataaatatggtaaggag
catgttgcacagattattacttttggaacgtatgcaactcgttccatccttcgtgaattg
atgaaaacaatgaatatccatgatcaagatgtcagctatattttacgcgagatgaagcgg
gcctcttcaaaaagtattcaaaggttgttacaagattcagcggaattagcaacgtatgtg
aaatcatctgaaaagctgaaaacgttattttccattgcaatgaagctggaggggttacca
agaaacgtatccacacatgctgcgggtgttgtcattagtgaacagccgttagtgacagat
gttcctttaaccagcggtacaggcgaaacctatttgacgcaatatgcaatgaacgaactg
gaagctgcagggttgttaaaaatggactttttggggcttagaaacctttcgttaatagaa
agagttacgaaaagtgtagcatatacgcataaaaaaaatgacatactaacggatatcccg
gagcaggatgaaaaaacttttgccatgctgcgaaaaggagagaccagtggtgtctttcaa
ttagagtcagcgggaatgcaaaatgttcttaaagaactgcagccgtcttcatttgaggat
attgtggcggtgaatgcactgtaccggccgggcccaatggattttatccctgtttatatc
cgacgaaaatttaagcaggaacctgtaacctacccgcatccggatttagagccaatttta
aaatcaacatacggtgtgcttatttatcaggaacagattatgcaaattgctcaccgtatt
gcagggttcagtttaggggatgcggatattttaagaagagctgtaagtaagaagaagaaa
gaagttatgcaggaacaagagcaagcttttataaaagggtgtttaaaaaatggctattct
caagcggtagcgggagagatttttagctggattgttcgcttttccaattatggatttccg
agaagccatgcagtagcatatagtaaaatatcctatcagctcagctttctaaaagcgcat
tatccagaagtatttttttcatgcttgttaacagatgccaaaaatcaacctgaaaagtta
ttagcttatcaagagtcattaaaagaaattaatatcgatatacttccgccgcatattaat
aggagctatcagcaatttacagttgaaaaaaaaggaatacgtgcagggctggctgcgatt
aaaggaatcagctatcaggcattacttcatgttttagagattcgaaaagaagccccgttt
gccggtttttttgatttttgtatgcgtattgatattaaaaaagtaaaccgcgctgccata
aaaaatcttattttagctggttcatttgatacttttcattccaatcgggcaagtctgatt
gaatctattgcgccagctcttgaacaaaaagagctttttcagggaatgtatgaagatgct
tctttatttcatgatgcattggaatataccgaaacagcggattattccatgatgcagaag
cttcattttgaaaaagaattgatgggtatctatatatcgaatcatccgtttgaaagctat
cggaatgtgttaagagcgaatggaattgtttctttcaaacaggcagatcagttcactgac
aagcgaaaagatatttttacagccggtgtagtggaagaaataaaagttattcgtacaaaa
aatagagaaagaatggcctttttaactgtctccgatgaggataaaaagagagacgctgtt
atctttccagacttatttcgtcaaatttcgaaccatctggaagaagagcagatcgtttgg
atgcgtgttactgtagaaaaaagaaatcagaagctccagtttgttataaaagaaatagct
gcttttgacctttctgaagtaggttttccagaaacaaaaaaattgtttatacgattgacc
gatcaagataaaagcagtgctttaaaatatttacagcagctggctgatcagcatccaggg
aagacaccagtgatcgtatataattcggtagataaggaaacgtatcagcttgcaaccaat
tattctcttcagttgagcgaaaaagaaatgaagcagttaaaaaattattttggaaatgat
aatgtagtagagagatga
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integrated database retrieval system
