Oceanobacillus jeddahense: NP439_22055
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Entry
NP439_22055 CDS
T08779
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ojd
Oceanobacillus jeddahense
Pathway
ojd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ojd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NP439_22055 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ojd03019
]
NP439_22055 (recQ)
03400 DNA repair and recombination proteins [BR:
ojd03400
]
NP439_22055 (recQ)
Enzymes [BR:
ojd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NP439_22055 (recQ)
Messenger RNA biogenesis [BR:
ojd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NP439_22055 (recQ)
DNA repair and recombination proteins [BR:
ojd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NP439_22055 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
NMDAR2_C
Sigma70_r4_2
GerE
Motif
Other DBs
NCBI-ProteinID:
UUI02687
UniProt:
A0ABY5JQT8
LinkDB
All DBs
Position
4622951..4625119
Genome browser
AA seq
722 aa
AA seq
DB search
MEKHLNILQNYFGYSSFRPGQAEVIDTIDQGNNVLAVMPTGGGKSLCYQVPGLAMNGTAI
IISPLISLMKDQVDGLHALGAAATYINSSISAGEQHQRLMAMQQNRYQFVYVAPERFESG
SFIHALQNTNISLIAFDEAHCISQWGHDFRPSYRSIVPILQEIGGNPIIMGLTATATPEV
IEDIQTLLHIAPENTVHTGFERKNLSFFIEKGVNKIDYIFSYLKKHQGEVGIIYAATRKQ
VEHVYDVLKEKGYAVSKYHGGLSEQERQTAQTAFIFDQTELMVATTAFGMGIDKSNVRFI
IHYAIPMNMESYYQEAGRAGRDGEPSNCVLLFSPQDVHTQKFLIEKSDLDEEGMQREYQK
LNKMVNYCRTQNCLNSYILNYFQMGSVSASVSCGRCSNCLKQGELEDITEEAQMILSCVK
RMRERFGTSMTAKVLKGSKDKKLIQFGLSKLSTYGILSKYTEKEITERIHFLLAEECLSA
EEGQFPTLKLNRKSMDILTGKENVTMFIQDVPRVEETDYSTDLFETLRQLRRTMSQELDL
PPYVLFSDMTLKEMARYLPEDKDEFLRLKGIGQKKYDLYGEAFLEAIANWKAENPDYKAP
TAIHYQKSAKGKDADDRPSYQISYDLLQKGKTIREIASIRDLKEQTIESHIFQAFQKGYT
LNWNLFFNTEEEGEILSKHEEIDPTGLRELKEALPEDYTYRKIKAVLVKNEKFAVKEGSS
AY
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcatttaaatattttacagaattactttggttactccagtttccggcctgga
caagctgaagttattgatacgattgaccaaggtaacaacgtgcttgctgtgatgcctacc
ggcggaggaaaatcactctgttaccaggtaccagggcttgcgatgaatgggacagcaatt
atcatttctccgctcatttcgctgatgaaggaccaagttgacgggctgcatgcattgggc
gcagcagcaacctatattaacagctctatttctgctggcgaacagcatcagcgtttaatg
gcaatgcagcaaaatcgatatcaatttgtttatgttgcaccagagcgttttgaatctgga
tcatttattcatgccctgcaaaatacgaatatttccctgattgcctttgacgaagcacat
tgtatttctcaatggggacatgattttcgtccaagctatcgttccatcgtccctattctt
caggagattggcggcaatccaattattatgggacttacggctaccgctacacctgaagtg
attgaagatattcaaacccttttacatattgctcctgaaaacacggtgcatactggcttt
gagagaaaaaacctttcctttttcatcgaaaaaggagtaaataaaatagactacattttt
tcttatttaaaaaaacatcagggagaagttggcattatttatgcagctacgagaaaacag
gtcgaacatgtctatgatgtcctaaaagagaaaggttatgctgtttccaaataccatggc
ggattatccgaacaggaacggcaaactgcacaaacggcatttatttttgaccagacagag
ttaatggttgccactacggcattcggaatgggaattgataaatccaatgtccgctttatt
atccactatgctatcccgatgaacatggaatcgtattatcaggaagctggaagagctgga
cgtgatggcgagccgagcaattgtgtgttgctattttctcctcaagatgttcacactcaa
aaatttctgattgagaaatcagatttggatgaagagggaatgcagcgggaatatcaaaag
ttgaataaaatggtgaactattgccgtacacagaactgcttaaacagttatattttaaac
tactttcagatgggttctgtttccgcttctgtttcctgcggacgctgcagcaattgcctg
aagcagggagaattagaggatattacggaagaagcgcaaatgattttatcctgtgtgaag
cgcatgcgtgaacgctttggcacgtctatgaccgcgaaagtattaaaaggctcgaaggat
aaaaagctgattcagtttggcttatcaaaactatctacttacggtattttatccaaatat
acggagaaagaaattacagagcgaattcattttctccttgctgaagaatgtttatccgca
gaggaaggacaattccctaccttaaaattaaaccgaaaatcaatggacattctgactgga
aaagaaaacgtaacgatgtttattcaggatgtccctcgtgtagaagaaacagattatagt
acagatctgtttgaaacactgcgtcagttaagaagaaccatgtctcaagagctggatttg
ccgccttatgtgctattttcagatatgacattaaaagaaatggctcgttatctgccggaa
gataaggacgaattcttacggttaaaagggataggacaaaagaaatatgacctatacgga
gaggcttttctggaagctatcgcgaattggaaagcagaaaatcccgattacaaagcaccc
acagcaattcattatcaaaaatcggcaaaagggaaagatgcggatgatcgcccatcttat
caaatatcgtatgacctcctgcaaaaaggaaaaaccattcgggaaattgcgtctatccgg
gatttgaaagaacagaccatcgaatcacatatttttcaagcttttcaaaaagggtataca
ctgaattggaacttattctttaataccgaagaagagggcgaaattttatccaagcacgaa
gaaatcgatccaactggattgagggagctgaaagaggctttgccggaagattacacgtat
cgtaaaattaaagctgtacttgtaaagaatgaaaaatttgcggttaaagagggatcatca
gcatattaa
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