Oncorhynchus keta (chum salmon): 118357640
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Entry
118357640 CDS
T09424
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118357640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118357640
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118357640
Spliceosome [BR:
oke03041
]
Complex C
Other components
Step II factors
118357640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
T2SSE
AAA_16
PhoH
TsaE
ABC_tran
Flavi_DEAD
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
118357640
NCBI-ProteinID:
XP_052334355
LinkDB
All DBs
Position
24:complement(47290412..47316273)
Genome browser
AA seq
1233 aa
AA seq
DB search
MVSYSIKFQICLLLVSSENKTISLRMANIGDNELEQLEYLSLVSKVCTELDNHLGISDKD
LAEFVISLAEKQPTFDGFKSLLLKNGAEFTDSLVGNLLRLIQTMRPPSKTSTNKAFEPVV
KQKSEKDKLKELFPALCRPDDPAPKAILDEDDVKIADAAMKELEMFMPSVSRSDSKSKSR
SDKKRRHSRSRSRDRDRRRRHRSRSRSRSRSRSRDRDRQRDRDRERDRDRGKKRASRWSE
RSRTPSPHRDRDRDTKDGSDRWKDKHVDRPPPEEPTVGDIFNGKITSIMQFGCFVQLEGL
RKRWEGLVHISELRREGRVANVADVVQKGQRVKIKVLSFTGSKTSLSMKDVDQETGEDLN
PNRRRNQGPDGEEEKIMRNPDRPTNLNLGHAPELEDDTLERKRLTKISDPEKWEIKQMIA
ANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKN
PDGSLSQAAMMQSALAKERREVKQCQREAEMDSIPMGLNKHWVDPLPDVDGRQIAANMRG
IGMMPTDIPEWKKHAFGGNKASYGKKTAMSILEQRESLPIYKLKEQLIQAVHDNQILIVI
GETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIR
FEDCTSPETVIKYMTDGMLLRECLIDPDLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQK
RTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYCKEPETDYLDASLITVMQI
HLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPEVPELIILPVYSALPSEMQTRIFDP
APPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQR
AGRAGRTGPGKTYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMD
APPMETLITAMEQLYTLGSLDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLT
IVSMLSVQNVFYRPKDKQALADQKKAKFHQAEGDHLTLLAVYNSWKNNKFSNPWCYENFI
QARSLRRAQDIRKQMLGIMDRHKLDVVTCGKATVRVQKAICSGFFRNAAKKDPQEGYRTL
IDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPT
RLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcatactccatcaaattccaaatatgtctgctgctggtttcttctgaaaacaaa
acaatctcgttgagaatggcaaacatcggagataacgagctagaacagctcgaatacctt
tcgttagtatccaaagtgtgcacagaactcgacaaccatctggggataagcgataaagat
ctagccgagtttgtcatcagccttgctgaaaagcaaccaacgtttgatggctttaaatca
cttctattgaaaaatggcgcagaattcacagattcacttgttggcaatttgctcagactt
attcaaacgatgcggcctccatcaaagacatctacaaacaaagcttttgagcctgtggtc
aagcagaagagtgagaaggacaaactgaaggagttgtttcctgcgttatgcaggccagac
gatccggctcctaaggccatactagacgaagacgatgtgaaaatcgcagacgctgccatg
aaggagttggagatgttcatgcccagtgtgagtagatcagactcaaagagcaagagcagg
tcggacaaaaagaggcggcacagcagaagccggagccgagacagggacaggaggaggcgt
catcgctctcggtcccgctctcgctctagatctcgctctagggaccgtgatcgtcagaga
gaccgagaccgtgagagggaccgcgaccgtggtaagaaacgtgcgtctcgctggagtgag
cgcagtcgcacccccagcccccacagagaccgagacagggacacaaaggacggctctgac
cggtggaaggacaaacacgtggaccgcccaccaccagaggagcctaccgtgggagacata
ttcaacggcaaaatcaccagcatcatgcagtttggctgcttcgtgcaactggaggggctg
aggaaacgctgggaggggttggtgcacatctctgagctacgcagagagggacgtgttgcc
aatgtggctgatgtggtccagaaagggcagcgagtcaagatcaaggtgctgtcctttact
ggctccaagaccagtctcagcatgaaggatgtggaccaggaaactggggaggacctgaac
cccaacagaaggaggaaccagggccctgatggtgaggaggagaaaatcatgaggaacccc
gaccgcccaaccaacctcaacctgggccacgcccctgagttggaggacgacacactggag
cgtaagagactgaccaagatatctgaccccgagaagtgggaaatcaaacagatgattgct
gctaatgttctttctaaagaggagttccctgactttgacgaggagactggtatcctcccc
aaagttgatgacgaagaagatgaggacctggaaattgagctggtggaggaggagcctccg
ttcctgagaggacacactaaacagagtatggacatgagccctgtcaagattgttaagaat
ccagacggctcgctgtcccaggctgccatgatgcagagtgctttggctaaggagaggagg
gaggtgaagcagtgtcagcgagaggctgagatggactctatccccatgggcctgaacaaa
cactgggtagaccctctgcctgatgttgatggaaggcagattgcagccaacatgagagga
attggcatgatgccaactgacatcccggagtggaagaaacatgcctttgggggcaacaag
gcctcttacggcaagaagacggcaatgtccatcctggagcagagagagagcctgcccatc
tacaagctcaaagagcagctcatccaggctgtccacgataaccagatcttgattgttatt
ggagagactggttctgggaaaactacccagatcacccagtacctggccgaggcgggctac
accactcgggggaagatcggctgcactcagccccgtcgtgtggcagccatgtctgtggcc
aagagagtctctgaagagtacggttgctgtctgggccaggaggtgggctacaccatccgt
tttgaggactgcaccagccctgagacggtgatcaagtacatgacagacggtatgttgctg
agagagtgtttgatagatccggaccttggccagtacgccatcatcatgttggatgaggcc
cacgagaggaccatccataccgatgtgctcttcggtctgctcaagaagacagtgcagaaa
cgcacagacatgaagctgattgtcacttcagccacgctagatgccgtcaagttctcccag
tacttctacgaagcgcccatctttaccatcccaggacgtacctatccagtggaggtgctc
tactgcaaagagcctgagacggactacctggacgccagtctcatcaccgtcatgcagatc
cacctgaccgagcctccaggtgatgtcctggtgtttctgacgggtcaggaggagattgac
accgcttgtgagatcttgtatgaacggatgaagtctctgggacctgaagtgcccgaactc
atcattctacctgtctactctgcgctgccaagcgagatgcagacccgtatctttgaccct
gctccccccggcagcagaaaggttgtcattgccactaacattgctgagacgtctctgacc
attgacggtatctactacgttgtggacccaggatttgtgaagcaaaaggtgtacaactcc
aagactggtattgaccagctggtggtgactcccatttcacaggcccaagccaagcagcgg
gctggtagagctggaagaactggcccagggaagacctacaggctgtacaccgagagagca
tacagagacgagatgctcaccaccaacgtgcctgagatccagagaactaacttggccagc
actgtgctgtccctcaaggccatgggcatcaatgacctgctatcgtttgatttcatggac
gctccacccatggagacgctgatcactgccatggagcagctctacactctggggtctctg
gacgatgaagggttgctcactcgtctcggacgcaggatggcggagttccctctggagccc
atgctgtgtaagatgctgatcatgtccgtccacctgggctgcagtgaggagatgctcacc
atcgtctccatgctgtctgtgcagaacgtcttctacaggcccaaggacaagcaggccttg
gctgaccagaagaaggctaagttccaccaggccgagggagaccaccttactctgctggct
gtctataactcctggaagaacaacaagttctccaacccctggtgctacgagaacttcatc
caggcccgttccttgcgcagagcccaggatatccgcaaacagatgctgggtatcatggac
agacataaactggatgtggtgacttgtggaaaggccacggtgcgtgtgcagaaggccatc
tgcagtggtttcttccggaacgcagccaaaaaggatccccaggagggctaccgtacgctc
attgaccagcaggtggtgtacatccacccctccagtgccctgttcaaccgccagcctgag
tgggtggtgtaccatgagttggtgctgaccactaaggagtacatgagggaggtgaccacc
attgacccacgctggctggtagagttctcgccggcctttttcaaagtgtctgatcccacg
cgtctcagcaaacagaagaagcagcagcgcctcgagcccctctacaaccgttacgaggag
cccaacgcttggagaatctcccgcgcctttcggcggcgctag
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integrated database retrieval system
