Oncorhynchus keta (chum salmon): 118357641
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Entry
118357641 CDS
T09424
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118357641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118357641
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118357641
Spliceosome [BR:
oke03041
]
Complex C
Other components
Step II factors
118357641
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
Flavi_DEAD
ABC_tran
nSTAND3
AAA_19
T2SSE
AAA_16
TsaE
PRP38_assoc
PhoH
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
118357641
NCBI-ProteinID:
XP_052334356
LinkDB
All DBs
Position
24:complement(47264870..47290141)
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AA seq
1186 aa
AA seq
DB search
MADFGVEELKRLEYLSLVSKVCTELDNHLGICEKDLAEFVICLAEKQPTFDGFKSLLLKN
GADFTDSLISNLLRLIQTMRPSKASTSKASEPVVKQKSEKDKLKEMFPGLCRPDNPAPIP
LEDDDVRVADAAMKELEMFMPSVSGTNLTSRLDNKRQRSRSRSQDRDRKRRSRSPSCDRE
RDRDFKRGRKRVSRWSDRSPSPSRDRAIEVGSDRCKDKHMDRPPPEEPAVGDIFNGKVTS
ILQFGCFVQLEGLRKRWEGLVHISELRKEGRVANVADVVQKGQRVKIKVLSFTGSKTSLS
MKDVDQETGEDLNPNRRRNQGPDGGEEKIMRNPDRPTNLNLGHAPELEDDTLERKRLTKI
SDLEKWEINQMIAANVLSKEEFPDFDEETGILPKIDDEEDQDLEIELVEEEPPFLRGHTK
QSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQRMAEMDCIPIGLNKHWVDPLP
DFDGRQIAANMRGIGMMPDGVPEWKKHAFGGNQASYGKKTVLSILEQRESLPIFKLKEQL
IQAVHDNQILIVVGETGSGKTTQITQYLAEAGYSARGKIGCTQPRRVAAMSVAKRVSEEY
GCCLGQEVGYTIRFEDCTSPETVIKYMTHGMLQRECLIDPDMGQYTIIMLDEAHERTIHT
DVLFGLLKKTVKKRPDMKLIVSSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYCKEPET
DYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPEVPELIILPVYS
ALPSEMQTRIFDPAPPGSRKVIIATNIAETSLTIDGIYYVVDPGFVKQNVYNSKTGVDQL
VVTPISQAQAKQRSGRAGRTGPGKCYRLFTERAYRDEMLTSNVPEIQRTNLASTMLSLKA
MGINDLLSFDFMDAPPMETMITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLI
MSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQQMADQKKAKFHQAEGDHLTLLAVYNSWKN
NKFSNPWCFENFIQARSLRRAQDIRKQMLGIMDRHKLDMVSCGKATVRIQKAICSGFFRN
AAKKDPQEGYRTLIDQQVVYIHPSSSLFNRQPEWLVYHELVLTTKEYMREVTTIDPRWLV
EFSPAFFKVADPTRLSKQKKMQRLEPLYNRYEEPNAWRISRAFRRK
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttggagttgaggagcttaagcggcttgaatacctgtctttggtgtccaaa
gtgtgtacagaacttgacaaccatcttggtatatgcgagaaagatcttgctgagtttgtc
atctgccttgctgaaaagcaaccaacatttgatggcttcaaatcacttctgctgaaaaat
ggagcagacttcacagattctctcatcagcaatttgctcagacttattcaaactatgcgg
ccgtcaaaagcatctacgagcaaagcctctgagcctgtggtcaaacagaagagtgagaag
gacaaactgaaggagatgtttcctggattgtgcaggccagacaatccagctcccattccg
ctagaagacgatgatgtgagggtagcagatgctgccatgaaagaattggagatgttcatg
cccagtgttagtggaacaaacttaacgagcaggttggacaacaaaaggcagcgaagcaga
agtcggagccaagacagagacaggaagagacgctcacgctctccatcttgcgaccgtgag
agggacagagacttcaaacgtggtcgaaaacgtgtttcccgctggagtgatcgcagtccg
agcccctccagggatcgagccattgaggttggttctgaccgctgtaaggacaaacacatg
gaccggcccccaccagaagagcctgctgtaggggacatattcaacggcaaagtcaccagc
atcctgcagtttggctgcttcgtgcaactggagggactgaggaaacgctgggaggggttg
gtccacatctctgagctacgcaaagagggacgtgttgccaatgtggctgatgtggtccag
aaaggtcaacgagtcaagatcaaggtgctgtcctttactggctccaagaccagtctcagc
atgaaggatgtagaccaggaaacaggggaggacctgaacccgaacaggaggaggaaccaa
ggccctgatggtggggaggagaaaatcatgaggaaccccgaccgcccaaccaacctcaac
ctgggccacgcccctgagttggaggatgacacactggaacgcaagagactgaccaagata
tctgaccttgagaagtgggagatcaaccagatgattgctgctaatgttctttctaaagag
gagttccccgactttgacgaggaaacgggtatcctcccaaaaattgatgatgaagaagat
caggacctggagattgagctggtggaggaggagcctccgttcctgagaggacacactaaa
cagagtatggacatgagccctgtcaagattgttaagaatccagacggctcgctgtcccag
gcagccatgatgcagagtgctttggctaaggagaggagggaggtgaagcaggctcagcga
atggctgagatggactgcatacctattggcctcaacaagcactgggtagaccccctccct
gactttgatggaaggcagattgcagccaacatgagaggaatcggcatgatgccagacggc
gtcccggagtggaagaaacatgcctttggaggcaaccaggcctcttatggcaagaagacc
gtgctttccatcctggagcagagagagagcctgcccatcttcaagctcaaagagcagctc
atacaggctgtccacgataatcagatcctgattgtggttggagagactggctctgggaaa
actacccagatcacccagtacctggccgaggcgggctactccgctcgggggaagatcggc
tgcactcagccccgtcgtgtggcagccatgtctgtggccaagagagtctctgaagagtac
ggttgctgtctgggccaggaggtgggctacaccatccgttttgaggactgcaccagccct
gagacggtgatcaagtacatgacacatggtatgctgcagagggaatgtctgatagatccg
gacatgggtcagtacacaatcatcatgttggacgaggcccacgagaggaccatccatact
gatgtgctctttggtctgctcaagaagacagtgaaaaaacgcccagacatgaagctgatt
gtgtcctcagcgacactagatgccgtcaagttctcccagtacttcttcgaggcgcccatc
tttaccatcccaggacgcactttcccagtggaggtgctctactgcaaagagcctgagacg
gactacctggacgccagtctcatcaccgtcatgcagatccacctgaccgagcctccaggt
gatgtcctggtgtttctgacgggtcaggaggagattgacaccgcttgtgagatcttgtat
gaacggatgaagtctctgggacctgaagtgcccgaactcatcattctacctgtctactct
gcgctgccaagtgagatgcagacccgtatctttgaccctgctccccccggcagcagaaag
gtaatcattgccactaacattgctgagacgtctctgactattgatgggatttactatgtg
gtggacccaggctttgtgaagcagaatgtctacaattccaagactggcgtcgaccaatta
gtggtgacccccatatcacaggcccaagccaagcagcgttctggtagggctggaagaacg
ggccctgggaaatgctaccggctatttacagagagagcctacagagacgagatgctcacc
agcaatgtgcctgaaatccagagaacaaacctggccagtaccatgctgtctctcaaggcc
atgggcatcaatgacctgctatcgtttgatttcatggacgctccacccatggagaccatg
atcacagccatggagcagctctacactctgggggctctggatgatgaggggttgctcact
cgccttggacgcaggatggcggagttccctctggagcccatgctgtgtaagatgctgatc
atgtccgtccacctgggctgcagtgaggagatgctcaccatcgtctccatgctgtctgtg
cagaacgtcttctacaggcccaaggacaagcagcagatggctgaccagaagaaggctaag
ttccaccaggccgagggagaccaccttactctgctggctgtctataactcttggaagaac
aacaagttctccaacccctggtgcttcgagaacttcatccaggcccgttccttgcgcaga
gcccaggatatccgcaaacagatgctgggtatcatggacaggcataaactggacatggtg
tcttgtggaaaggccacagtgcgcatacagaaggccatctgcagtggtttcttccggaac
gcagccaaaaaggatccccaggagggctaccgtaccctcattgaccagcaggtggtgtac
atccacccctccagttccctgttcaaccgccagcctgagtggttagtgtaccatgagttg
gtgctgactactaaggagtacatgcgggaggtgaccaccattgacccacgctggctggta
gagttctcgccggcctttttcaaagtggccgatcccacgcgtctcagcaaacagaaaaag
atgcagcgcctcgagcccctctacaaccgttacgaagagcccaacgcttggagaatctcc
cgtgcctttcgcaggaagtag
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