Oncorhynchus keta (chum salmon): 118357836
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Entry
118357836 CDS
T09424
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04010
MAPK signaling pathway
oke04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118357836
04020 Calcium signaling pathway
118357836
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oke04040
]
118357836
Ion channels [BR:
oke04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118357836
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
118357836
NCBI-ProteinID:
XP_052334580
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All DBs
Position
25:complement(11314011..11459423)
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AA seq
1868 aa
AA seq
DB search
MSMKMYGLGPMSYFHSSFNCFDFGVIIGSIFEVIWAVVKPGASFGISVLRALRLLRIFKV
TKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGLFNFDEETPTTNFDT
FPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSIYFIVLTLFGNYTLLNVFLAIA
VDNLANAQELTKDEEEQEVAITKKMALQKAKEVKEVSPMSAANISITALHSILYTGQHGA
ERAMPASFVKQNQGALSSSSSVCSVNSLKEQQKSLKMMSVWEQRTTQLRRHNLRASSEAL
YSELDPEERLRMSSALHIRPDMKTHLDRPLVVEPHDGPGPMGQHKPRTPEETDTPEDPAG
PQPRRHHRHRDRERPIDEANENGNPGKEGRHHVHHSRSKDPDGTRGKEGKSERSRSREGG
KRHHHQTLVDEGGGGGTGEREHRHHHSHRQAREGNGTVNSGGKGERRSRHKDGRSGERCS
RGENGANGERRRHKTHGSRGQSTLEGEDHSEREKGRGLRDRYVESEGDSLAISPQQDPGD
QRWGTEGPEDSDNQRNVRRTGQTAVNIPPVTITPPPGETTLIPMNSIDCETMPMNEEKKT
LEERTQSGPRPILPYSSMFVFGQANVVRRLCHYIVSLRYFEMCILVVISMSSIALAAEDP
VQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSYFRDLWNILDFIVVSGALV
AFAFSGSKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLF
MFIFAVIAVQLFKGKFFYCTDESKSLEKDCRGNFLDYDKDEVAAQPRVWKKYEFHYDNVL
WAFLTLFTVSTGEGWPDVLKHSVDATFEDQGPSPGYRIEISIFYVVYFVVFPFFFVNIFV
ALIIITFQEQGDKAMSECSLEKNERACIDFAINAKQMTRYMPENVQSFQYRMWKFVVSPP
FEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKHFNIVFTALFSLECILKIIAFGPLNYLK
DAWNVFDFVTVLGSITDIVVTEINDRLLNLSFLRLFRAARLIKLLRQGYTIRILLWTFVQ
SFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEDTAITHHNNFRTFLQALMLLFRSATG
EAWHEIMLSCLSHRACDERSGNLGKECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFE
YLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYLDMYQMLLHMSPPLGLGKKCPPRVAY
KRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLSSGMVAQRLSDAELKKELSTVWPSLS
QKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQNRAKRLKEQQQQQQQQNAAGSQQDKEK
EKAINNMEPPCELLPQPQPQALPRPSSTLLNNMEPPCELLPQPQALPRPSSTLLNNGGTL
PGHDGTLKGSSSWVSEKSREVHRPRNKTPVQRGQSEDVPNTTLPQESVEMRKMDTSDSTV
PGPGSGLENQGRAVSMPRLNAELQRSQSRHSPGTLLAPVPDCSPMKRSASTHAPQRPQEA
NLRDYTLETPSIQERPHHHHHHRCHHRRERDKKQRSLDRTPSTAGTPGIPAAEPSSRDRV
QDRGRSHERKNHSTAGEKQRYYSCDRYGSREHCHTTKSATTSCATSPSEVQDPSINKQGS
GSVKCSPVMMTSGASTPSRGRRQLPQTPLTPRPGVAYKTANSSPVHFVSAQCSSGLPTLS
PGRLSRGLSEHNALLHSGSSHIPSPVTRISSEPFLGYSHREAQGQGSLYCSLRDELLSPY
AARARSPRTALPQMGPGPLHLPPPPQQSHAVPNGYHFTFGGIGNASPESGSGARAPRYYH
EADEDEWC
NT seq
5607 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaaaatgtatggactaggacccatgagctacttccattcgtctttcaactgt
tttgacttcggagtgattataggcagtatttttgaggtgatctgggcagttgtgaaacct
ggggcctccttcggcatcagcgtcctgagagctctccgtctgcttaggattttcaaagtc
actaagtactggaactctctgaggaacctggtggtctctctactcaactccatgaagtcc
atcatcagcctgctgttcctcctcttcctcttcatcgtggtgttcgccctactgggcatg
cagctctttgggggactgtttaattttgacgaggagacgccaacaaccaactttgacacc
tttccagcagccattctcacagttttccagattctgacaggagaggactggaatgcggtg
atgtatcatgggatagagtcccaggggggcgtgcgccggggaatgttctcctccatctac
ttcattgttctcaccctgtttggaaactacactctcctcaatgtcttcttggccatcgct
gttgacaaccttgcaaacgcacaggagctcactaaggatgaggaagagcaggaggtggcc
atcaccaagaagatggccctccagaaggccaaggaggtcaaggaggtcagccccatgtcg
gccgcaaacatctccatcacagcgctacacagcatcctgtacacaggccaacatggagcg
gagagggcaatgccagcaagttttgtaaagcaaaatcaaggtgcactctctagcagctcg
tccgtctgcagcgttaattcacttaaggagcagcagaagtctctgaagatgatgtcagtg
tgggagcagcgaaccactcagctgaggagacacaacctgcgggccagcagtgaggccctg
tacagtgagctggaccctgaggagaggcttcgtatgtcctccgccctgcacatccgccct
gacatgaagacccacctggaccggcccctggtggtggaaccccatgacggccccggccct
atgggccaacacaagccccggacccctgaggagacggatacccctgaggacccggccggc
ccccagccacgcaggcaccaccgccaccgggacagggagagacccatcgacgaggccaat
gagaatggcaatccaggcaaagagggtaggcaccatgtccaccacagtcgtagcaaggac
ccagatggcacccggggcaaggaggggaagagtgagcggtcgcgcagccgagaggggggc
aagaggcaccaccaccagaccttagtggatgagggaggaggaggggggacgggggagaga
gagcaccgccaccaccactcccacagacaggccagagagggcaacggcactgtcaacagt
ggaggtaagggcgagcgcaggtcacgccacaaagatggccgctcgggagagaggtgctcc
aggggagagaacggagccaatggggagaggaggagacacaagacccacggctcaaggggc
cagtccacactggagggagaggaccacagtgagagagagaaggggaggggcctcagggac
agatatgtggagtctgagggcgactccctggccatcagcccccagcaggaccctggagat
cagaggtggggcacagagggacctgaagactccgacaaccagaggaacgtcagacggact
ggacagacggccgtcaacatcccccctgtcaccatcacccccccacccggggagactacc
cttatacccatgaacagtatagactgtgaaaccatgcctatgaacgaggagaagaagacc
ctggaggagcggactcagagtggacccagacccatcctgccttacagctccatgtttgtg
tttggccaggccaacgtggtgcggcgtctgtgtcattatattgtcagcctgcggtacttt
gagatgtgtatcctggtggtgatatccatgagtagcattgcattggctgcagaggaccct
gtccaggccaacgctccgcgcaacaatgtgctcaagtatctggactacgtcttcacgggg
gttttcacatttgagatggtgattaagatggttgacctgggcctcctgctccatcctggt
tcttacttcagagatctctggaacattctggacttcattgtggtcagtggcgcactggtg
gcatttgcattttcagggtccaaaggaaaggacatcagcaccatcaagtccctcagagtt
ctgcgagtcttacggcccctcaagaccatcaaacgcctacccaagctgaaggctgtgttt
gactgtgtggtcaactccctgaagaacgtgttcaacatcctcatagtctacatgctcttc
atgttcatcttcgctgtcatcgccgtgcagctgttcaagggcaagttcttctactgcacc
gatgagtccaagagcctggagaaagactgcagaggtaatttcctggactatgataaagat
gaggtggccgcccagcctcgggtgtggaagaagtacgagttccactatgacaacgtgctt
tgggccttcctcactctcttcactgtgtccaccggagagggctggcctgatgttctgaag
cactctgtggacgctacctttgaggaccagggtcccagtccaggctaccgtatagagatc
tccatcttctacgtggtctactttgtggtctttcccttcttcttcgtcaacatctttgtg
gccttgatcatcattaccttccaggagcagggagacaaggccatgtcagagtgcagcctg
gagaaaaacgagagagcctgcattgactttgccatcaacgccaagcaaatgacacgttac
atgccagagaacgtgcagtccttccagtaccggatgtggaagtttgtggtgtcacctccg
tttgagtactccattatgatcatgatcgccctgaacaccgtggtgctcatgatgaagttc
catggagctccagacttctacgaggccatgttgaagcacttcaacattgtcttcactgcc
ctcttctctctggaatgcattctgaagatcattgccttcggtcctctgaattacctgaag
gatgcctggaacgtgtttgactttgtgacagtgttgggaagtataactgacattgtggtc
acagaaatcaatgaccggctgttgaatctgagttttctgaggctgttcagagcagctcgt
ctcatcaagctgctgaggcagggatacaccatccgtatcctgctgtggaccttcgtccag
tccttcaaggccctgccctatgtttgccttctgatagcgatgctgttcttcatctatgcc
atcattggtatgcaggtgtttggaaacattgagctcaacgaggacacagccatcactcac
cacaacaacttccgcacatttcttcaggccctcatgctgctgttcaggagtgccacaggg
gaggcgtggcatgagatcatgctgtcgtgtttgagtcacagagcatgtgatgagaggtca
ggcaacctggggaaggagtgtggcagtgacttcgcctacttctactttgtctccttcatc
tttctctgctctttcctgatgctcaatctgtttgtggctgtcatcatggataactttgag
tacctgactcgagactcgtctatactggggcctcatcatctggatgagttcatccgtgtt
tgggctgagtacgaccctgctgcctgtggccgtatcaagtaccttgatatgtatcagatg
ctcctccacatgtccccacccttaggtttgggaaagaaatgtccgccaagagtcgcctac
aagcggctagtcaagatgaacatgcccatcgctgatgacaacacagtccactttacctcc
actctcatggccctgattcgcacggccctggagatcaaactgtcctcagggatggttgcc
cagcgtctttctgatgctgaactgaagaaagagctctctacagtttggccaagcctttca
cagaagactatggatctgttggttacaccacacaaacccaatgagcttactgttgggaag
gtgtatgcagccctgatgatctttgactactacaagcagaaccgagccaagaggctcaag
gagcagcaacagcagcaacagcaacagaatgctgccggctcccagcaggataaagagaag
gagaaggccatcaacaacatggagcctccctgtgaactacttcctcagccccagcctcag
gccctacctagacccagctccaccctgctcaacaacatggagcctccctgtgaactactt
cctcagcctcaggccctacctagacccagctccaccctgctcaacaacggaggcacactg
ccaggccatgatggcaccttgaaaggatcgtcctcctgggtgtcagagaagtctagagag
gtccacagacccaggaataagacacctgtccaaaggggccagtctgaagatgtcccaaac
acaacccttccccaggagtcagtggagatgaggaagatggacaccagtgacagcacagtg
cctggtcctgggtctggactggagaaccaggggagggctgtatccatgccccgcctcaac
gcagagctacagaggagccagtcacgccactccccggggaccctgctggcccctgttcct
gactgcagcccgatgaagcgctctgcgtccacccatgccccacagcgcccccaagaggcg
aacctgcgtgactacaccctggagacgcccagcatccaggaaaggcctcaccaccaccac
caccaccgctgccaccaccgtagagagagggacaagaagcagcggtcactcgacaggacg
ccaagcaccgctggtacaccaggaatcccggctgcagagccctcgtctagagacagggtg
caggaccgcggccgctcccatgagaggaagaaccactcgacggcaggggagaagcagcgc
tactactcctgcgatcgctacggcagcagggaacactgccacaccaccaagtctgccacc
accagctgtgccacctcccccagcgaggtgcaggaccccagcatcaacaagcagggtagt
ggttcggttaaatgcagcccagtgatgatgacctcaggggctagcacacccagccgtgga
cgcaggcagctaccccagacccccctgaccccccgccccggggtggcctacaagactgcc
aactcctcccctgtgcactttgtgtctgcccagtgtagcagtggcctgcccaccctgagt
cctggccggctgagccgcgggctgtctgagcacaacgccctgctgcacagtggctcctcc
cacatcccctcccctgtcacccgcatcagctctgagcctttcctgggttacagtcacagg
gaagcccagggccagggcagtctgtactgcagcctccgggacgagctgctgagcccctat
gctgccagagcacgctcccctcggaccgcactgcctcagatggggccggggcccctccac
ctgcctccgccaccccagcagagccatgcggtgcccaacggataccacttcacctttggt
ggtattggcaacgccagcccggagtctggctctggcgccagggcacccaggtactaccac
gaggcagatgaggatgaatggtgctag
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