Oncorhynchus keta (chum salmon): 118358652
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Entry
118358652 CDS
T09424
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04010
MAPK signaling pathway
oke04020
Calcium signaling pathway
oke04144
Endocytosis
oke04510
Focal adhesion
oke04540
Gap junction
oke04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118358652 (pdgfra)
04020 Calcium signaling pathway
118358652 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118358652 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
118358652 (pdgfra)
04540 Gap junction
118358652 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
118358652 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
oke01001
]
118358652 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
oke04090
]
118358652 (pdgfra)
Enzymes [BR:
oke01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
118358652 (pdgfra)
Protein kinases [BR:
oke01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
118358652 (pdgfra)
CD molecules [BR:
oke04090
]
Proteins
118358652 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
Receptor_2B4
Kinase-like
Motif
Other DBs
NCBI-GeneID:
118358652
NCBI-ProteinID:
XP_052336262
LinkDB
All DBs
Position
26:complement(18630400..18652623)
Genome browser
AA seq
1466 aa
AA seq
DB search
MDEMKTCLIIGVVLFGLLSVTCGLTPPTIVSTEDEFVLEPLSVFNISCTSKRNVAWVEPL
PVDTFVLPGYYTATLFIYNASVTHTGYYICKYQDEEGDEEDDEDNEAVIYVFVPDPKVPF
VPEEPGSMVVLVYPGETIIPCRVSDPRSPVVLKSAPSGVEVDAAYDNKIGFIGNLDAGLY
VCETIVNGVATTSDIYTVKDNKLMDDFHVEVKASEEAVRLGEPFNITCVAPPGLPYQQQW
IHPMKQAVDAVQLKQALPDRVVYTLSIPAASSQDSGVYECSITNNFSGEIRANMVAVTVF
EENSFVMLDHSGIGAVEFVSMMEETEFTIGIEAFPAPKVTWLKDGIAITENSYFLTETRR
LAGNHYQSTLTLRQPLEEDSGNYTVVVLSSAHTARFSFTLKVKESGPVLFQPASAPVLFP
QREEWIVPLHTPFTLTCRGEAELAWDTPVYLSEQTEEDNSGLFITTVTVENATAGHTGFY
TCFYKGGNSTEEGEDSSIYIYVPDPEVPFVPSLVPFGNHVLNGHDEMEIQCRVSDPGANV
TLVNADTQQAVPMVVYDSKRGAVGFFSAGTYVCKALVNGEEHLSEEYIVHGWAGGSELRV
ELKAQKTALLVGDTITVICVARGSEILEDHWKYPGKLADRGLKSVRENKRDQEIQYTLTV
PKASAKDSGIYVCSITDIISNENQTKKLAITVYERPFVSLRPAFSSQESADLDEVRQFQA
DIDSFPSAQVTWLKDGLPLNDVAAEITTSLRQVSETRYQSVLTLIRAKEEDSGNYTIRVQ
NGNQTHSHNFSLQVKVPAVIVDLMDLHHGSASGQSVVCIAGGMPTPKVEWFICKNIKHCA
NDSSEWVPLPTNNTEITVEAHIDQDNQLESQVIFGHLENTLAVRCLARNEMATVSREVKL
VSQDPHSELTVAAAALVLLVFVIISLIVLVIIWKQKPRYEIRWRVIESVSPDGHEYIYVD
PMQLPYDSRWEFSRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSS
EKQALMSELKIMTHLGPHLNIVNLLGACTKSGPTYIITEYCFYGDLVNYLHKNRENFVSV
HPEKTKKDLDIFGINPADESSRSYVILSFESGKGDYMDMKQADTTQYVPMLEMSDASKYS
DIQRSEYNHPPSQKGDSEMDNMLSGDGNEGLSTTDLLSFTYQVARGMEFLSSKNCVHRDL
AARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTTLSDVW
SYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHAPTDVYEMMMKCWNSEPEK
RPSFFSLSESVASLLPSGYKRCFERVNHEFLKSDHPAVTRVQVENDDTYVGITYKNQGKS
KDRESGFDEQRLSSDSGYIIPLPDLDPLSDDEYCKRNRHSSQTSEESAIESGSSSTLAKR
EGETLEDITLLDEMCLDSELVEDSFL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaatgaagacatgtctcatcattggggtggtcttgtttggattgttatcggtt
acctgcggactgacgccaccgaccattgtgtcaactgaagatgagtttgttctcgagcca
ctctccgtcttcaacatcagctgcactagtaaaaggaacgttgcttgggtcgagccctta
ccggtcgacacattcgttttgcctggctattacacggccacgctcttcatctacaacgct
tccgtgacacacaccggatattacatctgcaaataccaagacgaagagggcgatgaagag
gatgatgaagacaatgaggcagtcatatacgtttttgtcccagatcccaaggttccgttc
gtgcccgaggagccaggtagcatggtagttctagtctatcctggtgaaaccatcatccca
tgcagggtgtcagaccctcgatccccggtggtcctaaagagtgctcccagtggagtagag
gtggacgctgcttatgacaacaagatcggcttcattggcaacctggacgctggactctac
gtctgtgagaccatcgtgaacggcgtggcaacgaccagtgacatctacaccgtgaaggac
aacaaactgatggacgacttccatgtggaggtgaaggccagcgaggaggcagtgagactg
ggggaacccttcaacatcacctgtgtggcacctccaggactgccctaccagcagcagtgg
attcaccccatgaaacaggctgtggatgcagtccagttgaagcaggctctgcctgataga
gtggtctacaccctcagtatcccagcagcctcctctcaggacagtggggtgtatgagtgc
tctatcaccaacaacttcagtggagagatcagagccaacatggtggctgtcactgtcttc
gaggagaactcctttgtgatgttggaccacagtgggattggagcggtggagtttgtcagt
atgatggaggagacagagttcaccatcggtattgaagccttccctgctcctaaagtcacc
tggctgaaagacggtatcgccatcactgagaacagctacttcctcaccgagaccagacgt
ctggcgggcaaccactatcagagcactctgactcttcggcagccactagaggaggacagt
gggaattacaccgtcgtggtcctcagcagcgctcacactgcccggttctccttcaccctc
aaagtgaaagaatcaggcccagtactgttccagccagcctcagcgccagtgctgttcccc
cagagagaggagtggattgttcctctccacacccccttcaccctgacctgcaggggcgag
gccgagctggcctgggacacgcccgtctacctatcagagcagaccgaggaggacaacagc
ggcctgttcatcaccacggttaccgtagagaacgcgacagcagggcacactggcttctac
acctgcttctacaaaggagggaactccactgaggaaggagaggacagcagcatctacata
tatgtgccagatccagaggtgcccttcgtaccctcgctggtgccctttggcaaccacgtc
ctgaatggtcatgatgagatggagattcagtgtcgcgtgtcagaccccggtgccaatgtg
accctggtcaacgctgatacccagcaggccgtgcccatggtggtctacgacagcaagagg
ggtgccgtgggcttcttcagcgcaggaacctacgtctgtaaggccctcgtcaatggagag
gagcacctcagtgaggagtacatcgtccacggctgggcaggggggtcagagctgcgtgtg
gagctgaaggcccagaagacagccctcttggtgggagacaccatcactgtcatttgtgtg
gcccgggggtctgagatactggaagaccactggaagtaccctggaaaactggcggaccgg
ggcttgaagtcggtgcgtgagaataagagggaccaggagatccagtacacattgactgtc
cccaaggcctcagccaaagacagcggcatctatgtctgctccatcactgacatcatcagc
aacgagaaccagaccaagaagctggccatcactgtctatgagaggccattcgtgtcgctg
cgcccggcgttcagttcacaggagtcagcagatttggatgaggtcagacagttccaggct
gacattgactcctttcccagcgctcaggtcacatggctcaaagatggcctccctctcaac
gacgtggcggctgagataaccaccagcctccggcaggtcagcgagaccaggtaccagagt
gttctgaccctgattcgggccaaagaggaggacagtgggaactacaccatcagagtgcag
aacgggaaccagacccacagccacaacttcagcctgcaggtcaaagtgcctgcagtcatt
gtggacctgatggacctccaccatggctcagcctcaggccagtctgtagtgtgtatcgct
ggaggcatgcccactcctaaggtggagtggttcatctgcaagaacatcaaacactgtgcc
aacgactcgtctgagtgggtgcccctgcctaccaacaacacagagatcactgtggaagcg
cacatcgaccaggacaaccagctggagagtcaggtgatctttgggcatctggagaacacc
ttggctgttcgctgcctggccaggaacgagatggccaccgtcagcagggaggtcaaactg
gtgtcacaagaccctcactcagagctgactgtagctgctgctgccctggtgctgctggtc
tttgtcatcatctcactcattgttctggtcattatctggaaacagaagcctcgctatgag
atccgctggagggtgatagagtcagtgagccctgatggtcatgagtacatctacgtggac
cccatgcagctgccctatgactccagatgggagttctctcgcgatgggctcgtactggga
cgtatcctgggctctggggcgtttgggaaggtggtggagggaactgcatatggactcagc
cgctcccagcccgtcatgaaggtggccgtgaagatgctgaaacccacggcccgctccagt
gagaaacaggccctgatgtcagagctgaagattatgactcacctgggccctcacctcaac
atcgtcaacctgcttggggcctgtaccaagtcaggccccacctacatcatcactgagtac
tgcttctatggagaccttgtcaactacctgcacaagaacagagaaaactttgtcagcgtg
cacccagagaagaccaagaaagacctggacatctttggcatcaaccctgcagacgagagc
agcaggagctatgtgatcctgtcctttgagagtggtaaaggggactacatggacatgaag
caggcagacaccacgcagtacgtgcccatgctggagatgagtgacgcctccaagtactcc
gacatccagaggtccgaatacaaccacccgccatcacagaagggtgatagtgagatggac
aacatgctgtcaggggatggtaacgagggcctcagcaccacagacctgctcagcttcacc
taccaggtggccagaggcatggagttcctatcctctaagaactgtgtgcatcgggacctg
gctgccaggaatgtcctgctctctcaggggaagatagtgaagatctgtgactttggcctg
gccagagacatcatgcacgacaacaactacgtctccaaaggcagcaccttcctgccagtg
aagtggatggctccggagagtatctttgacaacatgtacaccaccctcagtgacgtctgg
tcctacggcatcctcctctgggagatcttctctctaggtggcaccccatacccagggatg
gtagtggactccagcttctacaacaagatcaagagtggctacagaatggccaaacctgag
catgcccccactgatgtgtatgagatgatgatgaagtgttggaatagtgagcctgagaag
aggccttccttcttcagcctgagtgagagcgtggcctcactgctgccttccggctacaag
aggtgtttcgagagggtgaaccatgagttcctgaagagtgaccacccggcagtgaccagg
gtccaggtggagaatgacgacacctacgttgggatcacctataagaaccagggcaagtcg
aaagacagggagagtggctttgacgagcagcgcctcagctctgacagtggttacatcatc
ccccttcctgacctggaccccctgtctgatgacgagtactgcaagaggaatcgccacagc
tctcagacgtctgaggagagtgccatagagtcgggctccagctccacgctggccaagaga
gaaggagagaccctggaggacatcaccctattggatgagatgtgtctggactcagagctg
gtggaggacagctttctgtga
DBGET
integrated database retrieval system
