Oncorhynchus keta (chum salmon): 118359175
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Entry
118359175 CDS
T09424
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118359175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oke03009
]
118359175
Ribosome biogenesis [BR:
oke03009
]
Eukaryotic type
Pre-60S particles
RNases
118359175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Motif
Other DBs
NCBI-GeneID:
118359175
NCBI-ProteinID:
XP_035593402
LinkDB
All DBs
Position
26:complement(27052587..27067619)
Genome browser
AA seq
1267 aa
AA seq
DB search
MLRSTGFFLGIDCPFYTDSCNVKSVKDGCKRPYCLFRHSQQRRASYGSNDIRKSNELYSK
QKEQCGYDPFKPEVVRPEEQQDGEPAAATVDMGALELELVNRAIEEVRSEVEREKKKLSR
IGDQEYDPTDSSPKVVTKWPKPLAVTSHLAYDPGSYQMTTTADYNPTPRSSKYTLDSDSK
DNHASSMEYVPTSVTKIAVKKPVPRTQTPHLHSLPTSLKYSTIASSSKNKYTVDHSKPST
DMEYDPLCNYSAKIAGKNKKHQRTGTTKGEGKKRPHLSGTGKQSTDEEYVPTSKKPRQVI
PDPLKYTASFSESDEESSGIEYRPTSLSRLQRTKSSSGSVEEPSGPGKGERTEGAVGGLK
QQRSQESKEQQDAAHWVSEDLENQEIVARQKDKPETEIVAGKTSQVKSSKVKNVHKSEKE
SSKKRGGGGGSSSKKGAGDGEKISDSKKSSHEAAKGDRKNQGKKEEKRKIKDTSIDKGKE
GKSKIRTDTFKGESSKRENEREKGGGDSKLQTSDKGKDSKFKEHKNGKYDSNEREKDSKK
VSKGSSKISKDKVKKSSSSTSDGKTGKVKQRSLSHVDLFGDESVEEESQGDEEEETIVRK
SAAPFKRGSLTRRNVSELTPSSSEDEDVGAEDDGGYGDMDDCGVDYSSLQVDMDFDLDDD
PMEECLRIFNESKDVKTEDKGRQAKPSKDSEDEDSTESNQTTLFPGQRKRVSHFSAKGST
EATPKPPPYRRLTAQEICYQRMQIAQQQAAQLAAAVKTASTPSPFPGERKRVAHRPTPLP
SSSKSGLAVAKSAGSRVLSPTSTLPAGLSVKAQTSAGILSKTTTTVVQKRVAHTPTMKSS
AMKRPVIPTAFGAKVPTNVRQRYLNTFIDECMKFCPSEDLAFQMALEEEKVVYDRSSSKN
IYLNVAVNSLKKLRSKNSSPNSLVAMNPAVVGNRKSQSHEEVLGGRLAAKTSFTINRTGK
QQAEKLSGATLYRKLRDYLMSEERLQEHGYPRPHPERSGRAVVHNVPEKNNVDPFAKVCC
RCGAEYKINANGNCVRKEECNHHWGRLRRHKVSGGWETNYNCCSGTVGSPGCSVSKQHVQ
DGRKESLGGYVQTFEKQLPPDGNCGVYALDCEMCYTKQGLELTRVTVINSELKVIYDTFV
KPESKVVDYNTRFSGVTEEDLENASITLRDVQAVMLNMFNAESILIGHSLESDLFALKVI
HSTVVDTAIVFPHRLGLPYKRALRNLMADHLKRIIQDSVEGHDSSEDACACMELMMWKIR
EDAKVKR
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgctgagatccaccggtttcttccttgggattgactgcccgttttacacggatagttgc
aacgtgaaaagtgtcaaagatgggtgcaaaagaccgtactgtcttttcagacacagccaa
cagagacgggcttcttatggatcaaatgacataagaaaatcaaacgagctttactccaaa
caaaaggagcaatgcggctatgacccattcaaaccagaggtagtgagacctgaggagcaa
caggatggggagcctgctgctgcgacagtggacatgggtgccttggagcttgagttggtc
aatcgtgccatcgaggaggtacgcagtgaggtggagcgggaaaagaagaaactctcacga
atcggggatcaggaatatgaccctaccgacagttcccccaaagtggttactaaatggcca
aaaccactggccgtgacatcacacttggcgtatgacccaggcagttatcagatgactaca
acagctgattacaaccctacccctcgctccagtaagtacaccttggattccgacagcaaa
gacaaccatgccagctccatggaatatgtgcccacctcagttaccaaaatagctgtgaaa
aagcctgttcctcgaacacaaactcctcatctacactctttgcctactagtcttaaatac
tccactattgcatcctcctccaagaataagtacaccgtggatcattctaaaccatccaca
gacatggaatatgaccccctctgcaactattcagcaaaaatagctggcaagaataagaaa
caccagaggacaggaactactaagggtgaaggaaaaaagagacctcacctgtcagggaca
ggaaagcagtcaacagatgaggaatatgtgccaaccagtaagaagcctcggcaggtaata
ccagacccactgaagtacactgccagtttctctgagtctgatgaagagagctctgggata
gagtatcgacccacctctctcagccgtctgcagaggacgaaaagcagcagtgggtcagtg
gaggaaccctcaggtccagggaaaggagagaggacggaaggagccgtaggtgggctgaaa
caacagaggagtcaggagtctaaagagcagcaggacgccgcacactgggtgtcagaggac
ttggagaaccaggaaatagtagctaggcagaaagacaagccagagactgaaatagtggca
ggtaaaaccagccaagtgaagagcagcaaagtaaagaatgtgcataaatctgaaaaggag
tccagtaaaaagcgtggtggtggtggtggtagtagtagtaaaaaaggagcaggggatggt
gagaaaataagtgattcaaagaaatcaagccacgaagctgcaaagggagaccgcaagaat
cagggaaagaaagaagaaaaacgcaagataaaggatacatctatagacaaaggcaaggag
ggaaagagtaagataaggacagacacatttaaaggggagtcaagcaagcgggagaatgag
cgagaaaagggaggtggggatagtaaactgcagacttcagacaagggaaaggactctaag
tttaaagaacacaagaatggtaaatatgacagcaatgaaagagaaaaagattcaaagaaa
gtaagcaaagggagttctaaaatcagtaaagacaaggtgaagaaaagcagcagtagcacc
tctgatggcaaaacaggaaaggtgaaacaaagatctctgagtcacgtagatctgtttggt
gatgagagtgtagaggaggaaagtcagggggatgaggaagaggagacaattgtgaggaag
tcagctgctcctttcaagagggggagtttgactaggaggaatgtctcagagctcaccccc
tcatcctcagaggatgaagatgttggtgcagaagatgacggaggctatggtgacatggat
gattgtggggtggactactccagtctgcaggtggacatggactttgacctggatgatgac
ccaatggaggagtgcttacggatcttcaatgaatccaaggatgtgaagactgaggacaag
ggaaggcaagccaagccctctaaagattcggaggatgaggattccacagagagcaatcaa
accactcttttccccggtcagaggaaaagggtttcacatttctcagccaaaggaagtact
gaggcaaccccgaagcctccaccatacaggagactgactgcccaggagatctgttaccag
cgtatgcagatagcacagcagcaggctgcccagctggctgcagctgtgaagactgcctcc
acacccagccctttccctggggagaggaagagagtagcccaccgccccacccctttacca
tcctcttccaaatctggtcttgccgtggcaaagtcggcgggcagcagagtgttgtcgccc
accagtaccctcccagcaggtctctctgtgaaggcccaaacatcagccggcatcctgtca
aagaccaccaccactgttgtacagaagagggtggcacacactcccacaatgaagagctct
gcaatgaagcggccagttattcccaccgcgtttggggccaaagttcccaccaacgtccgc
cagcgatacctcaacacatttatagacgagtgtatgaagttctgcccctctgaagacttg
gccttccaaatggccctggaggaggagaaggtggtgtatgaccggagcagcagtaagaac
atctacctcaacgtggcagtcaactccctgaagaagctacgcagcaagaacagctccccc
aactcactcgttgccatgaaccctgcagtggtggggaacaggaagtcccagtcccatgaa
gaagtgctggggggacgcctcgctgccaagaccagcttcacgataaacaggacgggcaag
caacaggcagagaaactcagtggtgctactctgtaccggaagctgagggactatctgatg
tcagaggaacggctgcaggagcatggataccctaggccacaccctgagcgctcaggtcga
gccgtggtccacaacgtcccagagaagaacaacgttgacccgtttgccaaggtgtgctgt
cgatgtggggccgagtataagatcaatgccaacggcaactgtgttcgcaaggaggagtgt
aatcaccactggggccgtctgcgcagacataaagtgtcgggaggctgggaaaccaactac
aactgctgctcaggaactgtgggctctcctggttgctccgtgtctaagcaacatgttcag
gacggccgcaaagagtctttgggtggctacgttcagacctttgagaaacagctgcccccg
gatggcaactgtggagtctatgccctggactgtgagatgtgctacacaaagcagggtctg
gagctgaccagggtgactgttatcaactctgagctgaaagtcatatatgacacatttgtt
aaacctgaaagtaaagtggtagactacaacacacggttttcgggtgtaacggaggaggac
ctggagaatgccagcatcaccctgagagacgtgcaggcggtgatgctcaacatgttcaac
gctgaatccatcctcataggacacagcctggagagtgacctttttgccctcaaggtcata
cacagcactgtagtggacacagcgatcgtgttcccccatcgcctgggcttgccctacaag
cgggccctaaggaacctcatggcagaccacctcaaacgcatcatacaggacagcgttgaa
ggtcatgactccagtgaggatgcctgcgcctgcatggagcttatgatgtggaagatccga
gaagacgccaaggtgaagaggtga
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