Oncorhynchus keta (chum salmon): 118359325
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Entry
118359325 CDS
T09424
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118359325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118359325
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118359325
Spliceosome [BR:
oke03041
]
Complex C
Other components
Step II factors
118359325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_30
AAA_16
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
118359325
NCBI-ProteinID:
XP_035593718
LinkDB
All DBs
Position
2:69047576..69068166
Genome browser
AA seq
1261 aa
AA seq
DB search
MEDDASLHRLEGSDPTAQVCGLIVKKSAAVEPHVFRAPTPRTSLLGLDLLAAQKRKEREG
KEQAEADSDDRNNKKSKVSSYKDWEEGKSDSGSDEEDKDEEDQGGRKESSRKYRVTGSET
PSNPGGVSEEFRRKHQQREKDRREHGMYASSKEDKNREREKDRERIRDTDRDRRGERDER
ERSNSRGSGRSERGDRSERSERSQREGWSSERISRGSKREEPPTPQTRPKDGTPSRTSWD
EDDSGYASSRRSHWESPSPAPSHKDSDKSERSERSPRSGRESERKDKSVRGRYPDDTPLP
TPSYKYNEWANDRKHLGSTPRLSRGKGKNEGEDGIAFDNDDEKQQWEEDQKQADRDWYMM
DEGYDEFHNPLTSTSEDYVKKREQILQKQTQKRISAQRRQINEDNERWETNRMLTSGVVQ
RLEVDDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQ
LVRKHREQKERKKAQQKHWELAGTKLGDIMGIKKTEDGDSSGGKPVGEDGKVDYRTDQKF
ADHMKDKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQL
TQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEELGSNLGEEVGYAIRFEDCTSEKTVI
KYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSA
TMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMGGDILI
FMPGQEDIEVTSDQIVERLEDLESAPPLTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVAT
NIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQC
YRLYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMY
QLWILGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFY
RPKGREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVREVR
SQLKDIMVQQRMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTS
SLFGMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRMENRRRA
KEEITNMEEEMSLAEQQLRSRREDQDRKSNVGSVRAVKICTPGRKEEAPMTPKRTPARFG
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgcgtcgctgcaccgactggagggcagtgaccccactgcgcaggtctgc
gggttgatcgtgaagaagagtgcagcagtagagcctcatgtctttcgtgcacccactcca
cgcacctctctcctgggcctggatctgctggcagctcaaaagagaaaggagcgagagggc
aaggagcaggctgaggctgacagcgatgacaggaataacaagaaatccaaggtttcctcc
tacaaggactgggaggaagggaaaagtgattctgggtctgatgaagaagacaaagatgag
gaggaccaaggtggtagaaaagagagcagcaggaaataccgtgtgactggctcagagaca
ccctctaaccctggaggggtcagcgaagagttccgtcgcaaacaccagcagagggagaaa
gaccggcgtgagcatggaatgtacgcctcctccaaagaggacaagaacagagagagggag
aaggacagagagaggatcagagatacggacagagatcgaaggggtgaaagagatgagcgg
gagcgcagtaacagccgcggcagcggccggtcggagcgtggagaccgcagtgagaggagt
gagcgctcacagagagaaggctggtcctccgaacgcatcagccggggtagcaagagagag
gagcctccaacgccccagacacgccccaaagatggcactccctcgcgcaccagctgggat
gaggatgacagcggctatgccagctcacgccgttcccactgggaatctccctctcctgcc
ccttcacacaaggattctgacaagtctgaacggtcggagcgcagcccccgctctggacgg
gagagcgagaggaaggacaagtcagtcagaggccggtatcctgatgacacgccccttccc
accccatcatacaagtacaacgaatgggccaatgacaggaagcacttgggctccactcct
cgtctgtcccgtgggaaaggtaagaatgaaggagaggatggcatcgcctttgataatgat
gatgagaagcagcagtgggaagaggaccagaagcaagcggacagagactggtacatgatg
gacgaaggctatgatgagttccacaacccactgacctccacctctgaggattatgtgaag
aagagagagcagatcctgcagaagcagacacagaaacgcatctctgcccagagacgacag
atcaatgaggataatgagcgctgggagactaaccgtatgctgaccagtggagtggtccag
aggctggaggtggatgatgattttgaggaggacaacgctgccaaggtccacctgctggtt
cacaacctggtccctcccttcctggacgggaggatagtcttcaccaagcagccggagcct
gtcatccctgtgaaagacgccacctctgacatggccatcatctcccgcaagggcagccag
ctggtccgcaagcaccgcgagcagaaagaacgcaagaaggctcaacagaaacactgggag
ctggcaggcaccaagctgggtgacattatgggcatcaagaagaccgaggacggggatagc
tctgggggcaagccagtgggtgaggatggcaaggtggactacagaacggatcagaagttt
gcagaccacatgaaagataagagtgaggccagcagtgagtttgctaagaagaagaccctg
ctggagcagaggcagtatctgcccatcttcgctgtgaggcagcagctgctcaacatcatc
agggacaacagcattgtgatcgtggtgggggagacgggcagtgggaagaccacccagctg
acccagtaccttcacgaggacggctacaccagttacggcatggtgggctgcacccagccc
cgcagagtggcagccatgagcgtggccaagagagtcagcgaggagctgggcagcaacctg
ggagaggaggtgggttatgcgatccgttttgaggactgtacgtcggagaagactgtgata
aagtacatgacagacggcatcctgctgagagagtctctcagggagtccgatctggatcac
tacagtgctgtcatcatggacgaggcccacgaacgctccctcaacacagacgtgctgttc
ggcctgctacgagaggttgtatcgaggcgttctgacctcaagctgatagtcacctcagcc
accatggactctgacaaatttgctgcatttttcggcaacgttccaatattccacattcca
ggaagaacattccctgtagacatcttattcagcaagactccccaggaagactatgtggag
gcagcagtgaagcaggccctacagatccaccttagtggtatggggggagacatcctcatc
ttcatgcctggccaggaggacatcgaggtgacgtcagaccagattgtggagcgtctggag
gatctggagagcgcccctcctctgactgtactgcccatctactcccagctgccctctgac
ctccaggccaagatcttccagaaggctcctgatggtgtgaggaagtgcattgttgccacc
aacattgccgagacctccctgactgtggatggtatcatgtttgttgtggatgctggatac
tgcaaactcaaggtgttcaaccctcgcattggcatggatgccctgcaggtgtaccccatc
agccaggctaacgccaaccagcgtgcgggcagagcaggacgtacagggccgggccagtgt
tacaggctgtacacccagagcgccttcaagaatgagatgttgaccaccaccatcccagag
attcagaggaccaacctggccaacgtggtgctgctgctcaaatccctgggggtccaggac
ctgctgctcttccacttcatggaccccccgcctgaggacaacatgctgaactccatgtac
cagctgtggatcctgggggccctggacaacacaggttccctgacgcccactgggaggctg
atggtggagttccctctggacccggctctgtccaagatgctgatcgtatcatgtgacatg
ggctgcagtgctgacatcctcatcatcgtctctatgctgtctgtaccggccatcttctac
aggcctaagggtcgtgaggaggagagtgaccaggtgagggagaagttctctgtcccagag
agtgaccacctgacctacctgaacgtctacctgcagtggaagaacaacaactactccagc
atctggtgcaacgaacacttcatccacaccaaggccatgcgaaaggtgcgcgaggtgcgc
tcccagctcaaagacatcatggtgcagcagaggatgaacctggtgtcctgtggctcagac
tgggacatcatcaggaagtgtatctgtgctgcctacttccaccaggcagccaagctgaaa
ggcataggggagtatgtgaatgtgaggacaggcatgccctgccacctccaccccaccagc
tctctgtttggtatgggctacaccccagactacatcacctaccacgagctggtcatgacc
accaaggagtacatgcagtgtgtgactgcggtggatggggagtggctggctgagctgggg
cccatgttctacagcgtcaaacaggcagggaagagcaggatggagaaccggcggcgggcc
aaggaggagatcactaacatggaggaggagatgtctctggcggagcagcaactgaggagc
aggagagaggatcaggacaggaagagtaacgtgggcagcgtcagggctgtgaaaatctgc
accccaggaaggaaggaggaagcacccatgaccccaaagcgcaccccagctcgttttggg
ctctag
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integrated database retrieval system
