Oncorhynchus keta (chum salmon): 118359675
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Entry
118359675 CDS
T09424
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118359675
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118359675
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118359675
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118359675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
118359675
NCBI-ProteinID:
XP_035594174
LinkDB
All DBs
Position
27:26363554..26395750
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AA seq
1420 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM
GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPAGLGGNFAAQMAG
GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP
GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA
GAKGEGGAPGENGASGPMGPRGLSGERGRPGPSGSAGARGNDGLPGPAGPPGPVGPAGAP
GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS
GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPHGAPGPA
GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT
GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPLGARGQPGVMGFP
GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ
GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTP
GSDGPKGAIGPSGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR
GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP
GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV
GSPGPNGNPGAAGPAGPAGKDGPKGVRGDSGTPGRQGDAGLRGAAGAPGEKGDAGGDGLP
GPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP
GLSGPSGEPGREGNTGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ
GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP
GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP
GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ
IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY
PSIANVPQKNWWTSKSNDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ
SLTYHCKNSVAYMDASTGNLKKSLLLQGSNDVEIRAEGNSRFTYSVMEDGCKKHTGQWGK
TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGTVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
ctatccattgtcagatgtcaggaagaggatgaccacgtggctattggtgctaagggccag
aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg
ggcccctcaggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat
gttggccccagaggcagagatggcgagcctggcaccccagggaaccccggaccccctggc
ccacccggacctaatggacctgcaggccttggcgggaactttgctgctcagatggcaggt
ggattcgacgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct
atgggtccccgtggtccccctggcccttctggagcccctggcccacaaggtttccaaggt
aaccccggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc
ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag
cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga
atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct
ggagctaagggtgagggtggtgctcccggagagaacggcgcgtctggaccaatgggacca
cgtggtctgtctggcgagagaggccgtcccggaccttctggctctgctggtgcccgaggt
aatgatggcttgcctggccctgctggtcctcccgggcctgttgggcctgctggagcaccc
ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact
gagggcgcacagggaccccgtggagaggctggtacacccggatctcctggacccgctggt
gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggcgcttct
ggaattgctggtgcacctggtttccccggaccccgtggcccccccggacctcagggagca
acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga
gaggctggtcccaagggagagcttggccctataggtccccatggcgcccctggccccgct
ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct
cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgcaggt
tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact
ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc
cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggatggt
cgccccggcccacctggtcctctgggagcccgtggccagcctggtgtgatgggattcccc
ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt
caaggtctgatcggtctggctggtaaagatggtgagactggtgctgctggacctcttggc
cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag
ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt
cctggagaggctggtgctgctggtgctactggacctagaggcgagcgtggtttccctggt
gagagaggcggtgctggacctcagggtctgcagggacctcgtggacttcctggaactccc
ggaagtgatggaccgaagggagccattgggccatctggtggtgctggagctcagggaccc
ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt
gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagatggttctaga
ggtttgactggtcccattggtcctcctggcccagctggtcccaatggcataaagggtgag
ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt
gagggtggtccccccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct
ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct
caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga
gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt
ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa
gacggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagatgctggg
ctgcgtggagctgctggagcccctggcgagaagggagatgctggcggggatggtctccct
ggtcccgatggtccttcaggtccccagggtctggctgggtcacgtggtattgttggtctg
cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt
aagcagggagctcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct
ggactgtctggaccttctggcgagcccggaagagagggcaacactggatctgatgggccc
cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt
gcacctggcgcccccggcgctcccggtgcccccggccctgttggccccctgggcaagcag
ggagacagaggagagggaggtgctcaaggacctgccggacccgctggaccagctggcgct
agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga
gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcctggacctcca
ggctccgctggagaccagggagctgctggacctgccggacctagtggtgctaagggaccc
cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga
ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc
ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc
ctgtctcagcctgagaagtctccggatcccctgaggtacatgagagctgacgaggcgtcc
agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag
attgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac
ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt
agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac
cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaacgaccgcaaa
catgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggacggt
accaacgctgccagtatccagctgaccttcctgaggctgctgtccacggaagcgtctcag
agcctcacctaccactgcaagaacagcgtggcctatatggacgcatccactggcaacctg
aagaagtctctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc
cgcttcacctacagcgttatggaggatggctgcaagaaacacacaggccagtggggaaag
actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc
atggacattggaggagcggaccaggagttcggtgtggatgtgggaacagtctgcttcttg
taa
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