Oncorhynchus keta (chum salmon): 118361310
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Entry
118361310 CDS
T09424
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
118361310 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oke03400
]
118361310 (xpc)
DNA repair and recombination proteins [BR:
oke03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
118361310 (xpc)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
118361310
NCBI-ProteinID:
XP_052338956
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Position
28:39776847..39789292
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AA seq
920 aa
AA seq
DB search
MVNSVIHDSVCNTIKTKVHDYIWNEASMAKRKESADTAVKTDTKKPKKVAKGKAGGPRAK
KENGEETEKVQRKAKHKSRLSKPKVGDTAETNTSKYFQNETPVKEEPADMSPETDLIPPF
IRARKDTVKPVKEEEEDSEEDEDWEEVEELSEPLGPVEPALPSQPVEIEIETPDIIHKRQ
KREKRKAEFETYLRRMMNRFNKDVVEDTHKVHLMCLLANGMFRNRLCSTPDLLAISLSLL
PTHFTMVAKERIDTNYLSGLLKWFGATFTLNPELPCEERPDPQALLERRLGSLTARDHQE
MTHLFLLVLRSLRLFCRLVLSLQPLSLKPPSAKSKAKNSGSPPRKSPSQKKPPKESPSEP
KVSPGSKRPAGVRAERGGKKAKKKEAGETEKAVSVGQKPKNSKRRSIASKVSYKEESSEG
EGPSDGEEFQLTNEEDSEDSEGGAKAIRAKKVKGGKSKSTAPQKISSGGKKSEEEDDDWE
GNEEGEEEQGMKRGKRKEGKGADEWLEVYLEKTGCWVCVEVLQGVGQPQLCSKQATHPMT
YVVAVDGDGHLKDLGSKYDPTWMTSTRKRRVDEEWWEVTLEPFLGPESERDVQEDKELQA
KLLDKPLPTSIAEFKNHPLYALKRHLLKYEALYPSTAAILGYCRGEPVYSRDCIHTLHSR
DTWLKEARTVRLGEEPCKMVRGFSNRSRKVRMASEQKDKDDLALFGEWQTEEYQPPVAVD
GRVPRNDFGNVYLFKPCMQPVGCVHLRLPNLQRVAKKLDMDCAAAVTGFDFHGGYSHAVT
DGYIVCEEHEEILRAAWAEDQEIQRQKEKEKREKRAVANWTLLVKSLLIRERLQRRYGKK
GPTPAGGLDQLKSQDREGVEGLSSDEEGEGGPNTASAALAQAWPQNRQGEQDSGTGGASK
TTSKRQKRGQEKHLFPFEKV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggtaaactcagtcattcacgattctgtctgcaacactattaaaacaaaagtacacgat
tacatttggaacgaagcgagcatggccaagcgtaaagagtctgcagacacagcagtgaag
accgacacaaagaagccgaagaaggttgcaaaaggcaaagctggaggaccaagagccaaa
aaagagaatggagaggaaacggagaaggttcagagaaaagccaagcacaaatcccgtctc
tctaaacctaaagtaggggacacagccgaaacaaacaccagcaaatacttccagaacgag
actccagtgaaggaggagcctgctgatatgagtcctgagactgatctcatccctcctttt
atcagagccagaaaagacactgtaaagcctgtgaaagaagaagaagaggacagcgaggag
gatgaagactgggaggaagtggaagagctgtctgagcccttaggtccagtagagccagcc
ctgccctcacagcccgtggagatagagattgagaccccagacatcatccacaagaggcag
aaaagggagaagaggaaggcggagtttgagacctatttgcgacgcatgatgaaccgcttc
aacaaagatgtggtggaggacacacacaaggtccacctcatgtgtcttctagccaatggg
atgttccggaaccggttgtgtagcacaccggacctgctggccatcagcctgtctctgctg
cccacccactttaccatggtggccaaggaacgcattgacaccaactacctctctggcctg
ctcaagtggtttggggcgacgttcacgcttaacccggagcttccctgtgaggagaggccc
gacccacaggccctgctggagaggaggctgggcagcctcaccgctagagaccaccaggaa
atgacacatctgttcctattggtgctgagatcgttgcggctcttctgtcgactggtgctc
tctctgcagcccctgtcactgaagcccccgtcagccaagagcaaggccaagaactcaggc
agcccgcctaggaagagtccatcgcagaagaagcctccaaaagagagcccctcagagccc
aaggtatccccagggtccaagagaccggcaggggtgagggccgagagaggagggaagaag
gcaaaaaagaaagaggcaggggagacggaaaaggctgtgtcggtgggacagaaacccaag
aactccaagcgccgcagcatagcctcgaaggtgagctacaaagaggagagcagtgaaggg
gaggggccaagtgatggggaggagttccagctgaccaatgaggaagacagcgaggactct
gagggaggagcaaaagcaatccgagccaagaaagtaaaaggaggtaagagcaagagtaca
gctccacagaaaataagtagtggaggcaagaagagtgaagaggaggatgacgattgggag
ggaaacgaagagggggaggaagagcaggggatgaagcggggcaagaggaaggaggggaag
ggtgcagacgagtggctggaggtgtatctggagaagactgggtgctgggtctgtgtggaa
gtgctgcagggcgtggggcagcctcaactgtgctccaagcaggccacccatcccatgacc
tacgtggtagccgtggacggggacggtcacctgaaggatctgggcagcaagtacgacccc
acctggatgacctccaccagaaagcgccgggtggacgaggagtggtgggaggtgacgctg
gagccattcctcggccccgaatctgagagggacgtccaggaggataaagagctccaggcg
aagttgctggacaagccgttgcccacgtcgatagcagagttcaaaaaccacccgctgtac
gccctgaagagacatctactgaaatatgaagctctctacccctccacagcggccatcctc
gggtactgcaggggagagcctgtctattccagggactgtattcacacgctacactcccga
gacacctggctgaaggaggcgcgcactgtccgtctaggagaggagccctgcaagatggtg
agagggttttccaatcgctctcggaaagtcaggatggcatcagagcagaaggacaaagat
gacctggctctgtttggtgaatggcagacagaggagtaccagcccccagtagctgtggat
ggcagggtgcctcgtaacgacttcggcaacgtttacctgttcaagccctgcatgcagcca
gttggctgtgtccacctgcgtctgcctaacctccagagagtggctaagaagctggacatg
gactgtgcagctgctgtcactggctttgactttcacggtggctactctcatgctgtaacg
gacggctacattgtgtgtgaggagcatgaggagatcctgagagcagcctgggcagaagac
caagagatacagagacaaaaggagaaggagaagcgggaaaagagggcagtggctaactgg
actctgctggtgaagagcctgctgatcagggagagactacagcgtcgctatgggaagaaa
ggcccaacacccgcaggaggcctggaccaactgaagagccaggatagggaaggggtagag
ggtctatcgtctgacgaggaaggggaaggtgggccgaacacggcttctgccgcactggca
caggcctggccccagaacagacagggggagcaggacagtggcacggggggagcctccaaa
actacatccaaacggcagaaaaggggccaggaaaagcaccttttcccctttgagaaagta
tga
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