Oncorhynchus keta (chum salmon): 118361358
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Entry
118361358 CDS
T09424
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
oke04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118361358
04518 Integrin signaling
118361358
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118361358
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oke00536
]
118361358
Glycosaminoglycan binding proteins [BR:
oke00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118361358
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
118361358
NCBI-ProteinID:
XP_035597123
LinkDB
All DBs
Position
28:complement(41084919..41115728)
Genome browser
AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLISIVRCQEEDDQEAGSCIQDAQRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEVVIGAKGQKGEPGEIADVV
GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGTPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD
GSKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI
GPQGGPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGVKGAPGDRGVP
GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGVPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ
GAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGVTGPRGERGFPGERGGAGSQGLQ
GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA
GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGGRGAQGGAGAT
GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK
GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGAGGDR
GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP
GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT
GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPAGPAGKDGSNGTPGPLGPSGPRGRSGET
GAAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD
STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNIGSTADAIKVFCN
METGETCVYPSIANVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL
RLLSTEASQSLTYHCKNSVAYMDASTGNLKKSLLLQGSNDVEIRAEGNSRFTYSVAEDGC
KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatccattgtcagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat
gcccaacgctataacgataaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac
cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgccccaact
gaggtggtgattggtgctaagggccagaaaggggaaccaggcgagattgcagatgttgtc
ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa
gctggcgctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctgga
acccccgggaaccccggaacccctggccctcccggacccaacggacccccaggtcttggc
gggaacttcgcggctcagatggctggtggattcgatgagaaagccggaggcgcacagatg
ggagtgatgcaaggacctatgggccctatgggtccccgtggtccacctggcccttctgga
gcccctggtccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct
ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag
gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga
ttccccggaactcctggtcttcccggaatcaaaggacacagaggtcatcctggtctcgat
ggatctaagggagagggtggtgctgctggagccaagggcgagggtggcgcccccggagag
aacggcgcccctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga
gcttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtcctcct
gggcctgttggacctgctggagcacctggtttccctggatcccctggctccaagggagaa
gctggccccactggtgcccgtggagctgagggcgcacagggaccccgcggagaggctggc
acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc
ggagctaaaggatctgctggtgcttctggtattgctggtgcacctggtttcccaggaccc
cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga
gaccccggtattcctggtttcaaaggagaggctggaccaaagggagagcttggccctatt
ggtccccaaggcggccctggccccgctggcgaggagggcaaacgaggagcaagaggagag
ccgggtgctgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt
ttcccgggtcaggacggtcttgctggtgttaagggagcccctggtgaccgtggtgttccc
ggcgtgggtgggcctaagggaggcactggtgatcccggccgcgcaggagagcctggtctt
cccggagccagaggtctcactggtcgccccggagatgctggtcctcaaggcaaagttggc
cctggtggtgctgctggtgaggacggtcgccccggcccacctggtcctcagggagcacgt
ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgtgcctggcaag
gcaggagagaagggtctcgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt
gagactggtgctgccggacctaacggccctgctggacctgctggagagagaggagagcaa
ggagctgctgggccatctggcttccagggtctgcctggacctgctggccccccgggagag
ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgcaggcgttacggga
cccagaggcgagcgtggtttccctggtgagaggggcggtgcaggatctcagggtctgcag
ggacctcgtggacttcctggaactcccggaaccgatggacccaagggagccattgggcca
actggtggtgctggatctcaggggccccccggcctgcagggtatgccaggagagagagga
gctggtggtatccttggagccaaaggtgacagaggtgacaacggtgagaaaggacctgag
ggcgctcctggaaaggatggttccagaggcttgtctggtcccattggtcctcctggccca
gctggtcccaatggcgtgaagggtgagggtggaccttctggcccaactggtgcggctggt
gcccgtggcgctcctggcgaccgtggtgagggtggtcctcctgggcctgctggcttcgct
gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag
aagggagatggtggtgcccctggacctcagggaccctctggggcccctggacctgtgggt
cccactggtgtttctggatctaaaggaggccgcggtgcccagggtggcgctggtgctact
ggcttccctggtgctgctggaagagttggatctcccggtcccaacggtaaccctggtgct
gctggccccgctggccctgctggtaaagacggtcctaagggagttcgcggtgacgctggc
accccaggaagacagggagatgccgggctgcgtggagttgctggagcccctggcgagaag
ggagatgctggagaagacggcccccctggccctgatggtccttcaggtccccatggtctg
gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagaggggcttccctggt
cttcctggaccgtctggagagcccggtaagcagggagcttctggtgctggtggtgaccgt
ggaccgcctggccctgtgggaccccctggactgtctggacctgcaggagagcccgggaga
gagggcaacgctggatctgatggaccccctggtagagatggatccactggagtcaagggt
gagcgtggtaacactggtcctgctggtgctcctggtgccccgggcgctcccggtgccccc
ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct
gccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgtgga
gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttcacc
ggtctgcagggtcttcccggacctcccggctccgctggagaccagggagctgctggacct
gccggacctagtggcgctaaaggaccccctggcccagccggtcccgctggtaaggatgga
tctaacggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact
ggtgctgctggtcctcctggtaaccccggaccccctggtcctcctggtcctcccggccct
ggcatcgacatgtctgccttcgctggcctgtctcagccagagaagtctccggatcccctg
aggtacatgagggctgatgaggcatccagctccctgaggcagcacgacgtggaggtggac
tccacactcaagtccctcaactaccagatcgagaacctgcgcagccccgacggtagccag
aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgagtggaagagtggt
gactactgggtggacccgaacattggcagcacagctgacgccatcaaggtcttctgcaac
atggagactggcgagacctgcgtgtaccccagcatagccaacgtgccgcacaagaactgg
tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggagga
ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcctg
aggctgctgtccacggaagcgtctcagagcctcacctaccactgcaagaacagcgtggcc
tatatggacgcatccacgggcaacctgaagaagtctctgctgctccagggctccaacgac
gtggagatccgagctgagggcaacagccgctttacctacagcgtggcggaggacggctgc
aagaaacatacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc
cgtctgcccatcgtggacattgctcccatggacatcggaggagcggaccaggagttcggc
gtggacgtgggcgcagtctgcttcttgtaa
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