Oncorhynchus keta (chum salmon): 118361382
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Entry
118361382 CDS
T09424
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118361382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oke03021
]
118361382
03036 Chromosome and associated proteins [BR:
oke03036
]
118361382
Transcription machinery [BR:
oke03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
118361382
Coactivators
SAGA/TFTC/STAGA complex
118361382
Chromosome and associated proteins [BR:
oke03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
118361382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
VHS
Motif
Other DBs
NCBI-GeneID:
118361382
NCBI-ProteinID:
XP_035597163
LinkDB
All DBs
Position
28:complement(42698842..42711797)
Genome browser
AA seq
947 aa
AA seq
DB search
MAAGSDLLDDAFFNTEVDEKVVSDLVGSLESELTGSGRGNSAVRVQAAANHIGNPAVCGK
SNVQDSKMGLSQELVKPGTSVQAGVINSTRSTMDTAAGTTAAAGSGMTAGHSQSKTGAAG
CVVTVVPDHGEGIGKTGSAGVQTLNGSSVVINSHNLVSSASSTVPAVTVVNNGPGSVVER
NVILPSTSIQTSLMDSAVTSTVVSSQPSVLNSVPTVTLVRPPMHTTGAVTSPSGSNTFLT
STSSVNVAHPACSGAQINKSEPKTAIQKTAQMTGTAAAVAKSPSTIAISPGGIRAIAPQV
LAPRLQQPQQNVPNIQNIQLPPGMVLVRSESGQLLMIHQQTLAQMQAQSQSPMTPRPATP
TSTPPVQITSVQAPGMPLMARQVTPTTIIKQGTPAQTTVLQRPPVLQQNTIVLGGAAATP
GQAQVQPGSAATAAVNQRAGTPGATGTPGTPATTMETLENVKKCKNFLSTLIKLASSGKQ
SSETTASVKDLVKSLLEGKIEAEEFTSRLYRELNSSPQPYLVPFLKRSLPALRQMTPDST
AFIQQSQLPQASVQPASSSTALTTVALGGTAAAQRLPLNRTTSPGAKGTMHQSPVISPAL
TPHSKPGLMVPQQQGALASTQVTLTQSPMVTFRGQSHSRIIMGHPQVVKQLQTVPVVKQA
LAPGAKVTLGRQSMLSVAQTNKLKEASGGTFKDDDDINDVASMAGVNLSEESARILATNS
ELVGTVTRSCKDEAFLHTTSLTRRVQEIGRRFGVIDLGPEVVNYVSHATQQRLQNLLEKV
TEVAQQKNITFKEDDKYEQVSDVRAQLKFYEQLDQMEKQRKEEQEREILMKAAKSRSRQE
DPEQLRLKQKAKEMQQQELNQIRQKEANMTALAAIGPRKKRKMESPVNGAGAEGSGSGPS
SSGGANSGGSRPQRQRITRVNLRDLLFCLENERETSSSHLLYKGFLK
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatttgctggatgatgcctttttcaacactgaggtggacgagaaa
gtagttagtgatctagttggatctttggagtctgagctcacgggatcgggtcgcggaaac
tctgcagtcagggtacaggctgctgcaaatcacattggcaaccccgctgtatgtggcaaa
tccaatgtccaggacagcaaaatgggactttcacaagagcttgttaaaccagggactagc
gtccaagcgggtgtcattaatagtacgaggtccaccatggatacagcggccgggacgacg
gcggcggcgggctcaggcatgacagcgggacacagtcagagtaagactggggcagccggt
tgtgtggtaacagtggttcccgatcacggggaaggaatcgggaaaaccgggtcggctggt
gtacaaactttaaatggaagtagcgttgtaataaactctcataatttggtgagctcggca
agcagcacggtgcccgccgtcacagttgtcaacaacggaccaggctccgtggtcgaacga
aacgtaatcttaccctcaacttccattcaaacctctctaatggacagtgctgtcacttca
actgtagtatcgtctcagccgtctgttctaaacagtgtgcccactgtcacgctcgtgagg
ccgcctatgcacaccaccggagcagtcacctcgccgagcgggagcaatacctttctgaca
tcgacatcatctgtcaacgtcgctcaccctgcatgttcaggagcacaaatcaacaagtcg
gagccaaaaacggcaatacaaaagaccgcacagatgacggggacggcagcagctgtagcg
aaaagcccatcgactattgcaatcagtcctggtgggataagggcgatcgctcctcaggta
ttggccccaagacttcagcagccccaacagaatgttccaaacatccaaaacattcagctc
cccccagggatggtgttggtgcgcagtgagagtgggcagctgttaatgatccaccagcag
accctggcccagatgcaggctcagtcccagagccccatgaccccacggccagccaccccc
accagcacgccccctgtccagatcacctctgtacaggctccagggatgcccctcatggcc
cgtcaggtgacccccaccaccatcatcaagcagggcaccccggcccagactactgtcctc
cagaggcctcctgtgctacagcagaacaccattgtgctgggtggggcggctgccacccca
ggtcaggcccaagtgcagcctggctcggcagcaacagcagcagtcaaccagcgagcaggg
acccccggagctaccgggacaccaggcactcccgctaccactatggagaccctggagaat
gtgaagaaatgcaagaacttcctttccacgctgatcaagttggcatccagcgggaagcag
tcgtcagagaccacggccagcgtcaaggacctggtcaagagcctgttggaaggtaagatc
gaagcggaggagttcaccagtcggttatatcgggagctcaactcctctcctcagccatat
cttgtgcctttcctcaagaggagtctccctgcactgcgtcagatgaccccagactcgaca
gccttcatccagcagagccagcttccccaggccagcgttcagcctgcctcctcctctaca
gccctgactacagtggcgctggggggcacggccgccgcacagagactccctcttaacaga
accaccagccccggggccaaggggaccatgcaccagtcccctgtcatcagcccggccctg
acacctcacagcaagcctggcctgatggtgccccagcagcagggggcgttggcgagtact
caggtaactctgacccagtcgcccatggttactttccgaggccagtcccacagtcgcatc
atcatgggacatccgcaggtggtcaaacagctgcaaacagttcctgtagtgaaacaagct
ctagcaccaggggccaaggtaacactggggcgccagtctatgctctctgttgcacagacg
aacaagctgaaggaggcaagcggaggaaccttcaaagatgatgatgatatcaatgacgtg
gcctccatggctggagtcaacctgtcagaggagagcgcccgtatactggcaaccaactct
gagctggtgggcacggtgactcgctcctgtaaggacgaggccttcctccacaccacctca
ctaacccggagagtacaggagatcggtaggaggtttggggtgattgacctggggccagag
gttgtcaactacgtttcccatgcaacacagcagcggctgcagaacctgctggagaaagtg
acggaggtggcgcagcaaaaaaacatcaccttcaaggaggatgataagtatgaacaggtg
agtgacgtgcgagcccagctgaagttctatgagcagctggatcagatggagaaacagagg
aaggaggagcaggagagggagatcctgatgaaggctgccaagtctcgatcgcggcaagag
gacccagagcagcttcggctcaaacagaaggccaaagagatgcagcagcaggagctgaat
cagatcaggcagaaggaggccaacatgacggccctggcagccatcggccccaggaagaaa
cggaaaatggagtcccccgtcaacggcgccggggctgagggttctggctctggtccctcg
tcgtcgggtggggccaatagcggaggctccagacctcagcgccagcgcatcaccagggtc
aacctcagggacctgctcttctgtctggagaatgagagagaaaccagtagctcacatcta
ctctacaaaggcttcctcaaataa
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