Oncorhynchus keta (chum salmon): 118361618
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Entry
118361618 CDS
T09424
Symbol
ptbp2a
Name
(RefSeq) LOW QUALITY PROTEIN: polypyrimidine tract-binding protein 2
KO
K14948
polypyrimidine tract-binding protein 2
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118361618 (ptbp2a)
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
118361618 (ptbp2a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_10
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
118361618
NCBI-ProteinID:
XP_052339301
LinkDB
All DBs
Position
28:complement(59419854..59435795)
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AA seq
520 aa
AA seq
DB search
MDGIGDVAVGVKRGSDELLSSSLYNSGSDMSSISDGTSNGSDSKKLRVEDRMEAPPSRVL
HIRKLPNETSETEVIALGLPFGKVTNILTLKGKNQAFLELGTEEAAITMVNYYSTVTPHV
RNVPVFIQYSNHKELKTDAGNQRAQAVLQAVSAVQGGGTPTSGSDLALTAASSPVLRIII
DNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFNDPSTAQQAKIALDGQNIYN
SCCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAMDPNMAAAFQGKDSNSLLGA
LSPLNAAAXAAAAAGRVALSGHSGSSGVLLASNLNEEMVTPQSLFTLFGVYGDTQRVKIL
YNKKDSALIQMADASQAQLAMSHLNGQKMYGKVIRVALSKHTSVQLPRDGLDDQGLTKDF
TNSPLHRFKKPGSKNFQNIFPPSTTLHLSNIPTDVTEEDLRLLFSNAGGTVNAFKFFQDH
KMALLQMSTVEEAIQGLIDLHNYNMGDNHHLRVSFSKSSI
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggacggtattggagatgttgcagttggcgtaaagagaggatcagatgagctgctgtcc
agcagtctctacaacagtggctctgacatgagcagtatcagtgatggtacgtccaacggg
agtgacagtaaaaaactgagagtggaagacaggatggaggctcctccttctcgtgtgttg
cacatcagaaaactgcccaacgaaacttcagaaacggaggtcattgccctggggttacct
ttcgggaaggtcaccaatatcctgactctgaagggaaaaaaccaggctttcttggagctg
gggacagaggaagcggcaattactatggtcaactactactctactgtgacaccgcatgtt
cgtaatgtccccgtattcatccagtactccaaccacaaagaactcaaaacagatgccgga
aaccagcgggcccaggcggtcctgcaggcggtgtcagcggtccaaggaggcggtacccct
acgtcgggttcagatctggctctaacagctgcatccagccctgtgctcagaataatcatc
gacaacatgttctaccctgtcactctggatgtgctgcagcagatcttctcaaagttcggc
acggtcatgaagataatcacattcactaagaacaatcagttccaggccctgctgcagttc
aacgacccatctactgcacaacaagccaaaattgccctggatggtcagaacatctataac
tcgtgctgtacgctccgcatcgattactccaagctggtcaacctgaatgtcaagtacaac
aacgataagagccgtgactacacccggccagagctccccgccggggatggacagcctgcc
atggaccccaacatggctgctgcctttcaaggcaaggactccaactctctgcttggtgcg
ctgagcccactgaatgctgcggcangcgcggctgctgctgcagggagggtggctctgtcc
ggtcactctggctccagcggcgtgctcctggcctccaacctcaatgaagagatggttacg
ccccaaagtctgtttactctcttcggggtctatggggacacccagagggtgaagattctt
tacaataagaaggacagtgctctgatacagatggccgatgccagtcaggcccagctagcg
atgagtcacctgaacggtcagaagatgtatggaaaggtcatcagggtggctctgtccaag
cacacctcagtgcagctgcccagggatggactggatgaccagggccttaccaaggacttc
accaactcccccctgcaccgcttcaagaagcccggctccaagaactttcagaacatcttc
cctccctccaccacccttcacctctccaacatcccaacggacgtaactgaagaagacctg
agactactgttctccaatgctgggggcactgtgaacgcattcaagtttttccaggatcac
aaaatggcgctgctccagatgtcaacggtggaagaggccatccagggtctgatcgacctc
cacaactacaacatgggtgacaaccaccacctgagagtgtccttctccaaatcctccatc
tga
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