Oncorhynchus keta (chum salmon): 118361637
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Entry
118361637 CDS
T09424
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oke04040
]
118361637 (trpc1)
Ion channels [BR:
oke04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118361637 (trpc1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
118361637
NCBI-ProteinID:
XP_052339435
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All DBs
Position
28:complement(61242959..61283676)
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AA seq
805 aa
AA seq
DB search
MVKWSLAPSSGMHISVLPYSFSVAMAALYQVTDVSSPDKFLALKDVREVKEETTLDEKLF
LLACEKGDYYMVKRLLEEKTELNINCVDVLGRDAVTISIENQNLDILKLLLEHGCQATDA
LLVAIDSEVVGAVDILLNHHPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYE
ILTMLLKQDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDP
ILRAFELSADLRELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHMANED
TVDKRGLMEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMST
VLSVAVLWPLLSLCYLVVPRSRVGHIIHTPFVKFIIHSASYFTFLLLINLYSLVYNEGKK
NTMGPALEMIDYLLILWIIGMVWSDVKRLWYEGLEDFLDESRNQLSFVMNSLYLSTFALK
IVAHSKFKNVEDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISVG
QMLQEFGKFLGLFLLVLISFTIGLTQLYGKDQKDPAKSPAKDCEGIFCQQQSNDAFHTFM
GTCYALFWYIFSLAHVALFVTRINYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKS
FRQIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLLTSMSKWICSHTST
GKVKRQNSLKEWRNLKRKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDL
SKFRNEMRDLLGFRTSKYAMFYPRS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggttaaatggtcgctggcgcctagtagtgggatgcacatcagtgtcctgccctactcc
ttctccgtcgcaatggccgctctatatcaggtcacggacgtgtcctctccggataaattt
ctggccctgaaagacgtgagggaggtgaaggaggagactactctggatgaaaagctcttc
ctactggcctgtgagaaaggtgactactacatggtgaagagactactggaggagaagaca
gagctcaatatcaactgtgtagacgtgctggggagagacgctgtcaccatctctatagag
aaccaaaacctggacatccttaagcttctgctagagcacggctgccaggcaacagatgct
ctgttagtggccattgactcggaggtggtgggagctgtggacatcctcctcaaccatcac
cccaggaggtcctctaagccctccatcgctaaactgatgcagcgcatccagaaccccgag
tactccaccaccatggacgtggctccagtgatcctggcggcccataggaacaactatgag
atactgaccatgttgctgaagcaggatatctccctgcccaggcctcacgctgtgggctgc
gagtgtactctctgtaatgccaagaacaagaaggacagcctacggcactccaggtttcgt
ctggacatctacaggtgtctggccagcccatctctgattatgctgaccgaggaggacccc
atcctcagggcctttgagctgagtgcagacctcagggagctcagcctggtcgaggtggag
ttcaggaatgactatgaggagctggctaagcagtgtaagatgtttgctaaggatctcctg
gcccaggcacgtaactccagagaactggaggtgatcctcaaccacatggccaatgaggac
acagtggacaagagaggcctgatggaggaacgcatgaacctcagccgactcaaactagct
atcaagtacaaccagaaagagtttgtggcccagtccaactgccagcagttcctcaacacc
gtctggttcggcgagacggccagctaccggcgtaaacacacgtgtctgaagatgtccaca
gtactgagcgtggcggtgctgtggccgctgctctccctgtgctacctggtggtgccgcgc
tcccgcgtgggccatatcatccacacgcccttcgtcaagttcatcatacacagtgcctcc
tacttcaccttcctcctgctcatcaacctgtactctctggtgtacaacgagggcaagaaa
aacaccatgggccctgccctggagatgatcgactacctgctcatactctggatcataggg
atggtgtggtcggacgtgaagcgtctatggtacgagggcttggaggacttcctggatgag
tcgaggaatcagctgagcttcgtcatgaactctctctacctgtccaccttcgccctcaag
atagtggctcacagcaagtttaagaacgtggaggacacagagaggaaaaattgggatgcc
ttccaccccatccttgtggctgaggggctgtttgccttcgctaacgtcctgagctaccta
cgactgttcttcatgtacaccaccagctcaatactgggcccactacagatctccgttggc
cagatgctgcaggagtttggtaagtttctgggtctgtttctactggtgctcatctctttc
accatcggcttgacgcagctctacgggaaggatcagaaggacccagccaagagtcccgcc
aaagactgtgagggcatcttctgtcagcagcagagcaacgacgccttccacacgttcatg
ggaacgtgctacgcactgttctggtacatcttctctctggcccacgtggctctcttcgtg
acccggatcaactacacggaggagctgaggtcatttgtgggagccctcatcgtgggcacg
tacaacatcgtggtggtcatcgttctcaccaagctgctggtcgccatgctccacaagagc
ttcaggcagatcgctaaccacgaggataaggagtggaagtttgcacgcgccaagctgtgg
ctgagctactttgacgacaagtgtaccctgccgccgcccttcaacatcctaccctccccc
aagactgtgtgctaccttctgaccagtatgagtaaatggatctgctcccacacctccacg
gggaaggtcaagagacagaacagcctcaaggagtggaggaacctgaagaggaagcgtgat
gagaactaccagaagatcatgtgttgtcttgtccatcgctacctgacgtccaccaggcag
aagatgcagagcactgaccaggccaccgtagagaacctcaacgacctgcggcaggacctc
tccaagttccgcaacgagatgagagacctgctgggattcagaacctccaagtacgccatg
ttctacccccggagctaa
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