Oncorhynchus keta (chum salmon): 118362385
Help
Entry
118362385 CDS
T09424
Name
(RefSeq) serine/arginine repetitive matrix protein 1-like isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118362385
03015 mRNA surveillance pathway
118362385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118362385
03041 Spliceosome [BR:
oke03041
]
118362385
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118362385
Spliceosome [BR:
oke03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
118362385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
118362385
NCBI-ProteinID:
XP_035598561
LinkDB
All DBs
Position
29:18554816..18568669
Genome browser
AA seq
875 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKIDEKENKDNRERESPRRRKSRSQSPRRRSPVKRE
RKRSHSRSPRRKPSPSSSPPPTAPAITLVSVTLPQGTEEPQPEPDTSESAVPEPVIQEAS
STSDLVKPHTVVVVPDSVMKVKEPSPGKASKKERPKPREKEGRRDRPRHRSRSHSRRRPK
SRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGPRHRRSRSPVRRRRSRSPSSSGSNSSAA
RSPQKAMKRTSTTPPRKQPRGHAADPSLSPSRRRAPNGSPPGKARRSASPRARKGRSSAS
PSRSAGSKKKPGSRNDSLSPVPKPRHSEASESEGATADPVQQRRQYRRQNRETSSDTGSS
SSSEDEGSKRPGGGSAARNGNVRRRRSRSPSSPRRRHRDGSPRKRRSPSPGGRRSPPRRR
RSPSPPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPTPLGPQKRRLSGSPPPKCLSPMPK
RRPSRSPKRRSPPPQKRRTPPLPTSPPRHRRSPMLPSNRPGRGTRSPPAVHSNRLSPSPA
NRGRAMRGSASPQGRFDSSGTSPPGQRRQVSPSHSNRAIRRVSRTPEPRKNQRASQSPQP
MRRASSRSPSGSPKPGALKRPAPASGFPSSGCSASGSPSAPLAKKASSGSGSPSPNKNSD
TEAGGKKNKKHKKEKKHKKDKKHKKHKKHKKEKSGVLVAAGDGQENLGMGEDVDSDHKKE
SDSEVEERLDDLEKHLREKALRSMRKAGKLSPPLS
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggcacaagtgcagaacaggacaatcgcttcagcaacaag
cagaagaaacttctaaagcaactgaaatttgcagaatgtcttgaaaagaaggtggatatg
accaaggtgaacctggaagtcatcaaaccttggatcactcagcgagtgacggagatcctg
gggttcgaggatgatgtcgtcatagaattcatatttaaccagctagaagaaaagcacccg
gacagtaagatgatgcagatcaacctgacgggcttcctgaatgggaagaatgccagagag
tttatgagggacctgtggcctctgctgctcagtgcccaggacaacattgccggtatcccc
tctgccttcctggagcagaagaaagaggagatcaaacagagacagattgagcaggagaag
cttgcctctctgaagaagattgatgagaaggaaaacaaagataacagagaaagggagagc
cccagaaggaggaagtcaaggtcacagtctccacggcgacggtctccagtgaagagagag
agaaagcggagtcactcccgctccccgaggcgtaagcccagtcccagcagctcccctcca
ccaacagccccagccatcaccctggtcagtgttacattgccccagggcactgaggagccc
cagccagagccagacacctctgagagcgccgtacctgagccagtcattcaggaggcctct
tccaccagtgatttggtgaagccgcacactgtggttgtggtacctgactctgtgatgaag
gtcaaagaaccctccccaggaaaggcttctaaaaaggagaggcccaagcccagggagaag
gagggcaggagggacaggccccgccaccgctctcgctcccattcccgcagacgacctaaa
tcgcggtccagatcttactccccacgccggaggccgagccccaggagacggatgtcccct
cgtcgtaggagcccccccagacgtggccccccaggccccagacacaggcgcagtcgctcc
cctgtccgcaggcggcgctctcgctccccatcatcctctgggagcaactcctccgcggct
cgctcacctcagaaggccatgaagagaacgtcaaccacacctcctaggaaacagccccgc
ggccacgcagctgatccctccctcagcccctccaggagaagagcccccaatggtagcccc
cctgggaaggcccgacgctctgcctcccctcgggctagaaagggccggtcctcagcctcc
ccgtccagatcagctggttcaaagaagaaaccaggatcaaggaatgattcactgtctcct
gttccaaaacccaggcattctgaggcatcggaatcagagggggctaccgcagatcctgtg
cagcagcgacgtcagtaccgcaggcagaatcgggagacgtcttcagatactggatcatcc
tcctcatcagaggacgaggggtccaagaggccgggcggagggtcagcggcgaggaatggg
aatgtcaggaggcggcgcagtcgttccccctcctcccccaggagacgacacagggacggc
tcccccagaaaaaggcgctccccctctcctggaggacgccgatctcccccacgccgtcgc
agatctccctctcctcctccgagacgcaggtctccctctccacctcctcgcagacgctcc
ccctcccccagacggtactctccccccatccagcggcgctacagccctactcccctgggc
ccacagaagagaaggctatcggggtctccccctcccaaatgcctttccccgatgcccaag
cgccgtccctccaggtccccgaagcgcaggagtccccctccccaaaagagacgcacacct
cccctccccacctctcccccccgacacaggaggagccccatgctcccatccaaccggcca
ggccggggcacgcgctccccccctgctgttcacagtaaccgcctctccccctcccctgcc
aaccgtggccgggccatgcgtgggtctgctagtcctcaggggcgctttgactcctcgggc
acctctccacctggccagaggcgccaggtgtccccctcacacagcaacagggcaatccgc
agggtgtcccggacaccagagccccgcaagaaccagagagcctctcaaagccctcagcct
atgaggagagcgtcatcaaggtcaccgtctggttctcctaaaccaggagccttgaagcgg
ccggccccagcctcaggcttcccctcatcgggctgctcggccagtggctcgccatcagcc
cctctggccaagaaggccagcagcggctctggcagcccttctccaaacaagaattcagac
actgaggctggaggaaagaagaacaaaaaacataagaaggagaagaaacataagaaggac
aagaagcacaagaaacacaagaaacacaagaaagagaagagtggagtgctggtggctgct
ggggatggccaggagaacctggggatgggagaggatgtagactccgaccataaaaaggaa
tcagacagtgaagtagaagagcgtctggacgacctggagaagcacctgcgagagaaggca
ctgcgttccatgaggaaagctggaaagctgtccccgccactgtcttga
DBGET
integrated database retrieval system
