Oncorhynchus keta (chum salmon): 118362698
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Entry
118362698 CDS
T09424
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118362698
03015 mRNA surveillance pathway
118362698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118362698
03041 Spliceosome [BR:
oke03041
]
118362698
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118362698
Spliceosome [BR:
oke03041
]
Complex C
Other components
EJC/TREX
118362698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
118362698
NCBI-ProteinID:
XP_035599145
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All DBs
Position
29:30027375..30032589
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AA seq
694 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGVGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEIQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNVMFEERREAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEEGGEGVKHKEDRKKKPVEKV
GEQESKKGGTKADEMEEAEEDSQDTRIVEFRDVGEQMEGTALVREAEGQARDGDQKIEDS
PVEVGNEKGVEEQQPVKAEKEPLHGQDLTAVSDGQEKSIDMQPNEDEEPRTEVATPLLSE
CNPRVEVSDVTSMAPEVQIPLLETGTDPEPLTTEQSQEADQGAIKQTINAQPAQAQDDAA
APKELAPPSKEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSRSSS
SSGSSSSSSSRSRSRGRKDKKRRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKDKGS
KSDRKRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagacccggc
caagttagacggccaaccatcccaggtgttggaggaggtagggggcgaggaatcaacttg
ttgaggcgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggccctcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaaattcaagctgaacaagagcgcaaaaaagtagagggcgaaagacgagagctcttt
gaggagaggcgtgccaagcagacagagctgagactgttggaacagaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatgttatgtttgaggagagacgcgaggcatttgctgaa
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctctgggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaacaggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaggaa
gaggggggtgagggtgtaaaacataaggaggacagaaagaaaaagccagtagagaaagtc
ggggagcaggagtctaagaagggggggactaaagcagatgagatggaggaggctgaggaa
gacagtcaagacactagaatagtggagtttagagatgtgggggagcagatggagggtact
gcactagtgagggaggctgaagggcaggccagggatggggatcagaagattgaggatagt
ccagtggaggtaggtaatgagaaaggagtcgaagagcagcaaccggttaaggcagaaaag
gagccccttcacggtcaggacctcacagctgtgtcagacggccaggagaagagcattgat
atgcaaccaaacgaagatgaagagccacgtacagaagtggccacacccctgctctcagag
tgcaaccctcgtgtggaagtctctgatgtaacatctatggctcctgaggttcagatcccc
ctactggagactggaacggatccagagccgctcacaaccgagcagagccaagaggctgat
caaggtgccataaagcagaccattaatgcccagcctgcccaggcccaggatgatgctgcg
gctcccaaggagctggcgcccccgagcaaggaagccagcaggggacgtaagaagtcaaag
gacaaaaagggaggtggtggtggtagaagcagcagtagctcatctagcagctcctccggc
tcctcgtccagtgggagctctggctcctcctctagtggctcctccagcaggagcagctcc
tccagtggcagctcctccagctcttctagcaggagccgcagccgagggaggaaggacaag
aaacgtaggaggaggccatccgagagggacagggagagaaagaaggcagtagttgagagg
agccacaagtcatccaagggcagtggtcgtgaatccaaaggttccaaagataagggctcc
aagtctgacaggaagaggaccacctctgaaggcagccggtcagggaagaggtcctctcgc
ggcgacagggatcgcaagtcagataggaaggaaaagaggcgttaa
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